Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RETREG3Q86VR2 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RETREG3Q86VR2 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
RETREG3Q86VR2 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RETREG3Q86VR2 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
RETREG3Q86VR2 MIR639-201ENST00000384974 98 ntBASIC21.93■■□□□ 1.1
RETREG3Q86VR2 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
RETREG3Q86VR2 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.93■■□□□ 1.1
RETREG3Q86VR2 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
RETREG3Q86VR2 AC233723.2-201ENST00000623798 2106 ntBASIC21.93■■□□□ 1.1
RETREG3Q86VR2 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.93■■□□□ 1.1
RETREG3Q86VR2 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
RETREG3Q86VR2 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.92■■□□□ 1.1
RETREG3Q86VR2 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RETREG3Q86VR2 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RETREG3Q86VR2 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RETREG3Q86VR2 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
RETREG3Q86VR2 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RETREG3Q86VR2 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RETREG3Q86VR2 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RETREG3Q86VR2 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
RETREG3Q86VR2 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RETREG3Q86VR2 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RETREG3Q86VR2 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.91■■□□□ 1.1
RETREG3Q86VR2 EP400NL-214ENST00000641289 2402 ntBASIC21.91■■□□□ 1.1
RETREG3Q86VR2 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RETREG3Q86VR2 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.91■■□□□ 1.1
RETREG3Q86VR2 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
RETREG3Q86VR2 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
RETREG3Q86VR2 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.91■■□□□ 1.1
RETREG3Q86VR2 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
RETREG3Q86VR2 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.91■■□□□ 1.1
RETREG3Q86VR2 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RETREG3Q86VR2 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
RETREG3Q86VR2 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
RETREG3Q86VR2 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.9■■□□□ 1.1
RETREG3Q86VR2 DUSP8P3-201ENST00000399571 1760 ntBASIC21.9■■□□□ 1.1
RETREG3Q86VR2 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
RETREG3Q86VR2 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
RETREG3Q86VR2 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RETREG3Q86VR2 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
RETREG3Q86VR2 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.89■■□□□ 1.1
RETREG3Q86VR2 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.89■■□□□ 1.1
RETREG3Q86VR2 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
RETREG3Q86VR2 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.89■■□□□ 1.09
RETREG3Q86VR2 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
RETREG3Q86VR2 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
RETREG3Q86VR2 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
RETREG3Q86VR2 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RETREG3Q86VR2 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
RETREG3Q86VR2 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RETREG3Q86VR2 AC092068.2-201ENST00000590491 1708 ntBASIC21.88■■□□□ 1.09
RETREG3Q86VR2 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RETREG3Q86VR2 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
RETREG3Q86VR2 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.88■■□□□ 1.09
RETREG3Q86VR2 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.87■■□□□ 1.09
RETREG3Q86VR2 C1orf229-201ENST00000623686 2258 ntBASIC21.87■■□□□ 1.09
RETREG3Q86VR2 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
RETREG3Q86VR2 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.87■■□□□ 1.09
RETREG3Q86VR2 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RETREG3Q86VR2 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
RETREG3Q86VR2 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RETREG3Q86VR2 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RETREG3Q86VR2 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RETREG3Q86VR2 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RETREG3Q86VR2 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RETREG3Q86VR2 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
RETREG3Q86VR2 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
RETREG3Q86VR2 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.86■■□□□ 1.09
RETREG3Q86VR2 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
RETREG3Q86VR2 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.86■■□□□ 1.09
RETREG3Q86VR2 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
RETREG3Q86VR2 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.86■■□□□ 1.09
RETREG3Q86VR2 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
RETREG3Q86VR2 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RETREG3Q86VR2 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.86■■□□□ 1.09
RETREG3Q86VR2 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RETREG3Q86VR2 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.85■■□□□ 1.09
RETREG3Q86VR2 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RETREG3Q86VR2 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RETREG3Q86VR2 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RETREG3Q86VR2 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.85■■□□□ 1.09
RETREG3Q86VR2 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RETREG3Q86VR2 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
RETREG3Q86VR2 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
RETREG3Q86VR2 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RETREG3Q86VR2 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RETREG3Q86VR2 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
RETREG3Q86VR2 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.84■■□□□ 1.09
RETREG3Q86VR2 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RETREG3Q86VR2 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
RETREG3Q86VR2 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RETREG3Q86VR2 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
RETREG3Q86VR2 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RETREG3Q86VR2 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.83■■□□□ 1.09
RETREG3Q86VR2 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
RETREG3Q86VR2 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RETREG3Q86VR2 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.83■■□□□ 1.09
RETREG3Q86VR2 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RETREG3Q86VR2 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 8.1 ms