Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
USP48Q86UV5 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
USP48Q86UV5 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
USP48Q86UV5 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC28.18■■■□□ 2.1
USP48Q86UV5 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
USP48Q86UV5 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC28.18■■■□□ 2.1
USP48Q86UV5 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC28.18■■■□□ 2.1
USP48Q86UV5 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP48Q86UV5 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP48Q86UV5 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC28.17■■■□□ 2.1
USP48Q86UV5 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
USP48Q86UV5 AC010501.1-201ENST00000606270 1962 ntBASIC28.17■■■□□ 2.1
USP48Q86UV5 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
USP48Q86UV5 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
USP48Q86UV5 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
USP48Q86UV5 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
USP48Q86UV5 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC28.16■■■□□ 2.1
USP48Q86UV5 PARL-206ENST00000435888 1098 ntTSL 5 BASIC28.16■■■□□ 2.1
USP48Q86UV5 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC28.16■■■□□ 2.1
USP48Q86UV5 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
USP48Q86UV5 SSSCA1-AS1-201ENST00000567594 614 ntBASIC28.16■■■□□ 2.1
USP48Q86UV5 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC28.16■■■□□ 2.1
USP48Q86UV5 ANKRD20A6P-201ENST00000618763 204 ntBASIC28.16■■■□□ 2.1
USP48Q86UV5 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
USP48Q86UV5 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
USP48Q86UV5 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP48Q86UV5 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP48Q86UV5 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP48Q86UV5 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC28.15■■■□□ 2.1
USP48Q86UV5 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP48Q86UV5 AL136967.2-201ENST00000623968 743 ntBASIC28.15■■■□□ 2.1
USP48Q86UV5 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
USP48Q86UV5 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
USP48Q86UV5 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
USP48Q86UV5 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC28.14■■■□□ 2.1
USP48Q86UV5 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
USP48Q86UV5 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC28.13■■■□□ 2.09
USP48Q86UV5 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP48Q86UV5 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP48Q86UV5 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP48Q86UV5 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP48Q86UV5 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP48Q86UV5 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC28.13■■■□□ 2.09
USP48Q86UV5 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
USP48Q86UV5 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
USP48Q86UV5 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
USP48Q86UV5 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC28.12■■■□□ 2.09
USP48Q86UV5 SRD5A1P1-201ENST00000442297 786 ntBASIC28.12■■■□□ 2.09
USP48Q86UV5 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC28.12■■■□□ 2.09
USP48Q86UV5 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC28.12■■■□□ 2.09
USP48Q86UV5 SNX5-217ENST00000606557 1087 ntBASIC28.12■■■□□ 2.09
USP48Q86UV5 MIR6722-201ENST00000617286 78 ntBASIC28.12■■■□□ 2.09
USP48Q86UV5 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC28.12■■■□□ 2.09
USP48Q86UV5 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
USP48Q86UV5 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC28.11■■■□□ 2.09
USP48Q86UV5 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC28.11■■■□□ 2.09
USP48Q86UV5 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP48Q86UV5 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP48Q86UV5 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP48Q86UV5 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
USP48Q86UV5 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC28.09■■■□□ 2.09
USP48Q86UV5 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC28.09■■■□□ 2.09
USP48Q86UV5 STOX2-205ENST00000513034 807 ntTSL 3 BASIC28.09■■■□□ 2.09
USP48Q86UV5 AF213884.3-201ENST00000563833 479 ntBASIC28.09■■■□□ 2.09
USP48Q86UV5 GRAMD4P4-201ENST00000613563 1115 ntBASIC28.09■■■□□ 2.09
USP48Q86UV5 MIR6821-201ENST00000617625 74 ntBASIC28.09■■■□□ 2.09
USP48Q86UV5 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
USP48Q86UV5 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
USP48Q86UV5 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
USP48Q86UV5 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
USP48Q86UV5 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
USP48Q86UV5 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
USP48Q86UV5 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
USP48Q86UV5 RBM38-205ENST00000440234 686 ntTSL 2 BASIC28.07■■■□□ 2.08
USP48Q86UV5 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC28.07■■■□□ 2.08
USP48Q86UV5 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC28.07■■■□□ 2.08
USP48Q86UV5 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
USP48Q86UV5 MED17-227ENST00000640521 2047 ntTSL 5 BASIC28.06■■■□□ 2.08
USP48Q86UV5 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC28.06■■■□□ 2.08
USP48Q86UV5 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
USP48Q86UV5 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC28.06■■■□□ 2.08
USP48Q86UV5 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC28.06■■■□□ 2.08
USP48Q86UV5 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
USP48Q86UV5 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
USP48Q86UV5 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC28.05■■■□□ 2.08
USP48Q86UV5 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
USP48Q86UV5 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC28.05■■■□□ 2.08
USP48Q86UV5 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC28.05■■■□□ 2.08
USP48Q86UV5 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
USP48Q86UV5 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC28.04■■■□□ 2.08
USP48Q86UV5 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC28.04■■■□□ 2.08
USP48Q86UV5 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
USP48Q86UV5 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC28.04■■■□□ 2.08
USP48Q86UV5 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC28.03■■■□□ 2.08
USP48Q86UV5 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
USP48Q86UV5 MIR939-201ENST00000401314 82 ntBASIC28.03■■■□□ 2.08
USP48Q86UV5 AC097381.1-201ENST00000429019 1296 ntBASIC28.03■■■□□ 2.08
USP48Q86UV5 AC087623.3-201ENST00000607047 1098 ntBASIC28.03■■■□□ 2.08
USP48Q86UV5 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
USP48Q86UV5 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms