Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00643Q86TS7 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00643Q86TS7 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00643Q86TS7 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00643Q86TS7 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00643Q86TS7 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00643Q86TS7 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00643Q86TS7 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00643Q86TS7 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC14.49□□□□□ -0.09
LINC00643Q86TS7 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00643Q86TS7 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC00643Q86TS7 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC14.47□□□□□ -0.09
LINC00643Q86TS7 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
LINC00643Q86TS7 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
LINC00643Q86TS7 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00643Q86TS7 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00643Q86TS7 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
LINC00643Q86TS7 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
LINC00643Q86TS7 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
LINC00643Q86TS7 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00643Q86TS7 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC14.47□□□□□ -0.09
LINC00643Q86TS7 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00643Q86TS7 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC00643Q86TS7 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 PALM-208ENST00000592155 2272 ntTSL 4 BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00643Q86TS7 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC14.46□□□□□ -0.1
LINC00643Q86TS7 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LINC00643Q86TS7 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC14.46□□□□□ -0.1
LINC00643Q86TS7 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
LINC00643Q86TS7 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LINC00643Q86TS7 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
LINC00643Q86TS7 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 RARG-204ENST00000543726 1779 ntTSL 2 BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00643Q86TS7 AC127502.1-201ENST00000399971 1502 ntBASIC14.45□□□□□ -0.1
LINC00643Q86TS7 AC007952.6-201ENST00000573168 2673 ntBASIC14.45□□□□□ -0.1
LINC00643Q86TS7 AC003957.1-201ENST00000625108 2673 ntBASIC14.45□□□□□ -0.1
LINC00643Q86TS7 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
LINC00643Q86TS7 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00643Q86TS7 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00643Q86TS7 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00643Q86TS7 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LINC00643Q86TS7 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
LINC00643Q86TS7 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00643Q86TS7 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms