Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CSMD3Q7Z407 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CSMD3Q7Z407 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC16.23■□□□□ 0.19
CSMD3Q7Z407 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
CSMD3Q7Z407 AC136469.2-201ENST00000623944 1028 ntBASIC16.23■□□□□ 0.19
CSMD3Q7Z407 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSMD3Q7Z407 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC16.23■□□□□ 0.19
CSMD3Q7Z407 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CSMD3Q7Z407 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CSMD3Q7Z407 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CSMD3Q7Z407 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSMD3Q7Z407 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSMD3Q7Z407 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSMD3Q7Z407 HLA-L-209ENST00000420110 1011 ntBASIC16.22■□□□□ 0.19
CSMD3Q7Z407 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSMD3Q7Z407 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSMD3Q7Z407 AC027612.3-201ENST00000413684 1047 ntBASIC16.22■□□□□ 0.19
CSMD3Q7Z407 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC16.22■□□□□ 0.19
CSMD3Q7Z407 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CSMD3Q7Z407 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 AC008764.7-201ENST00000593779 1081 ntBASIC16.21■□□□□ 0.19
CSMD3Q7Z407 AL138724.1-201ENST00000606771 1088 ntBASIC16.21■□□□□ 0.19
CSMD3Q7Z407 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC16.21■□□□□ 0.19
CSMD3Q7Z407 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CSMD3Q7Z407 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CSMD3Q7Z407 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD3Q7Z407 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD3Q7Z407 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD3Q7Z407 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD3Q7Z407 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD3Q7Z407 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD3Q7Z407 LBH-205ENST00000407930 756 ntTSL 2 BASIC16.2■□□□□ 0.18
CSMD3Q7Z407 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD3Q7Z407 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD3Q7Z407 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSMD3Q7Z407 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC16.19■□□□□ 0.18
CSMD3Q7Z407 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CSMD3Q7Z407 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD3Q7Z407 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
CSMD3Q7Z407 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC16.19■□□□□ 0.18
CSMD3Q7Z407 AL137784.2-201ENST00000607332 1000 ntBASIC16.19■□□□□ 0.18
CSMD3Q7Z407 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD3Q7Z407 AC005703.6-201ENST00000623265 1329 ntBASIC16.19■□□□□ 0.18
CSMD3Q7Z407 AC123595.1-201ENST00000440769 1046 ntBASIC16.19■□□□□ 0.18
CSMD3Q7Z407 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC16.19■□□□□ 0.18
CSMD3Q7Z407 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CSMD3Q7Z407 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CSMD3Q7Z407 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 REST-206ENST00000612429 1376 ntTSL 5 BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 REST-207ENST00000616975 1370 ntTSL 5 BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CSMD3Q7Z407 AC009102.2-201ENST00000606772 1639 ntBASIC16.18■□□□□ 0.18
CSMD3Q7Z407 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CSMD3Q7Z407 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CSMD3Q7Z407 RAB43-208ENST00000615093 783 ntTSL 5 BASIC16.17■□□□□ 0.18
CSMD3Q7Z407 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CSMD3Q7Z407 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CSMD3Q7Z407 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC16.17■□□□□ 0.18
CSMD3Q7Z407 AC006455.2-201ENST00000429931 906 ntBASIC16.17■□□□□ 0.18
CSMD3Q7Z407 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC16.17■□□□□ 0.18
CSMD3Q7Z407 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CSMD3Q7Z407 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC16.16■□□□□ 0.18
CSMD3Q7Z407 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CSMD3Q7Z407 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CSMD3Q7Z407 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC16.16■□□□□ 0.18
CSMD3Q7Z407 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CSMD3Q7Z407 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
CSMD3Q7Z407 TSPY26P-201ENST00000476365 1326 ntBASIC16.16■□□□□ 0.18
CSMD3Q7Z407 SHF-206ENST00000560471 2499 ntTSL 5 BASIC16.16■□□□□ 0.18
CSMD3Q7Z407 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CSMD3Q7Z407 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
CSMD3Q7Z407 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CSMD3Q7Z407 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC16.16■□□□□ 0.18
CSMD3Q7Z407 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CSMD3Q7Z407 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CSMD3Q7Z407 AC004911.1-201ENST00000416316 871 ntBASIC16.15■□□□□ 0.18
CSMD3Q7Z407 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CSMD3Q7Z407 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms