Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
CCDC88AQ3V6T2 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC28.53■■■□□ 2.16
CCDC88AQ3V6T2 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC28.53■■■□□ 2.16
CCDC88AQ3V6T2 AC092437.1-201ENST00000624794 1048 ntBASIC28.53■■■□□ 2.16
CCDC88AQ3V6T2 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
CCDC88AQ3V6T2 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 ASB1-202ENST00000409297 878 ntTSL 5 BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC28.52■■■□□ 2.16
CCDC88AQ3V6T2 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC28.51■■■□□ 2.15
CCDC88AQ3V6T2 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
CCDC88AQ3V6T2 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
CCDC88AQ3V6T2 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
CCDC88AQ3V6T2 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC28.51■■■□□ 2.15
CCDC88AQ3V6T2 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC28.51■■■□□ 2.15
CCDC88AQ3V6T2 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
CCDC88AQ3V6T2 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
CCDC88AQ3V6T2 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC28.5■■■□□ 2.15
CCDC88AQ3V6T2 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
CCDC88AQ3V6T2 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
CCDC88AQ3V6T2 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
CCDC88AQ3V6T2 AC022517.1-201ENST00000592429 346 ntBASIC28.5■■■□□ 2.15
CCDC88AQ3V6T2 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC28.5■■■□□ 2.15
CCDC88AQ3V6T2 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
CCDC88AQ3V6T2 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC28.49■■■□□ 2.15
CCDC88AQ3V6T2 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC28.49■■■□□ 2.15
CCDC88AQ3V6T2 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC28.49■■■□□ 2.15
CCDC88AQ3V6T2 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC28.49■■■□□ 2.15
CCDC88AQ3V6T2 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
CCDC88AQ3V6T2 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
CCDC88AQ3V6T2 AL031602.1-201ENST00000633169 911 ntBASIC28.49■■■□□ 2.15
CCDC88AQ3V6T2 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CCDC88AQ3V6T2 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CCDC88AQ3V6T2 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC28.48■■■□□ 2.15
CCDC88AQ3V6T2 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CCDC88AQ3V6T2 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC28.47■■■□□ 2.15
CCDC88AQ3V6T2 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC28.47■■■□□ 2.15
CCDC88AQ3V6T2 AC090877.2-201ENST00000558441 1738 ntBASIC28.47■■■□□ 2.15
CCDC88AQ3V6T2 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CCDC88AQ3V6T2 AC005703.6-201ENST00000623265 1329 ntBASIC28.47■■■□□ 2.15
CCDC88AQ3V6T2 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
CCDC88AQ3V6T2 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC28.47■■■□□ 2.15
CCDC88AQ3V6T2 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 AL137784.2-201ENST00000607332 1000 ntBASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 SP2-202ENST00000613139 908 ntTSL 5 BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CCDC88AQ3V6T2 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
CCDC88AQ3V6T2 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC28.45■■■□□ 2.15
CCDC88AQ3V6T2 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC28.45■■■□□ 2.14
CCDC88AQ3V6T2 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 ID1-201ENST00000376105 1233 ntBASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 AC099791.2-201ENST00000605725 427 ntBASIC28.44■■■□□ 2.14
CCDC88AQ3V6T2 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC28.43■■■□□ 2.14
CCDC88AQ3V6T2 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC28.43■■■□□ 2.14
CCDC88AQ3V6T2 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
CCDC88AQ3V6T2 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC28.43■■■□□ 2.14
CCDC88AQ3V6T2 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC28.43■■■□□ 2.14
CCDC88AQ3V6T2 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
CCDC88AQ3V6T2 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC28.43■■■□□ 2.14
CCDC88AQ3V6T2 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
CCDC88AQ3V6T2 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CCDC88AQ3V6T2 DUX4L2-201ENST00000561772 1275 ntBASIC28.42■■■□□ 2.14
CCDC88AQ3V6T2 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC28.42■■■□□ 2.14
CCDC88AQ3V6T2 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC28.42■■■□□ 2.14
CCDC88AQ3V6T2 DUX4L6-201ENST00000626483 1275 ntBASIC28.42■■■□□ 2.14
CCDC88AQ3V6T2 DUX4L1-201ENST00000627662 1275 ntBASIC28.42■■■□□ 2.14
CCDC88AQ3V6T2 DUX4L8-201ENST00000629013 1275 ntBASIC28.42■■■□□ 2.14
CCDC88AQ3V6T2 DUX4L3-201ENST00000630187 1275 ntBASIC28.42■■■□□ 2.14
CCDC88AQ3V6T2 DUX4L7-201ENST00000630678 1275 ntBASIC28.42■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms