Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
NKX3-2P78367 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
NKX3-2P78367 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC25.74■■□□□ 1.71
NKX3-2P78367 MAG-206ENST00000597035 542 ntTSL 4 BASIC25.74■■□□□ 1.71
NKX3-2P78367 AC099791.2-201ENST00000605725 427 ntBASIC25.74■■□□□ 1.71
NKX3-2P78367 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC25.74■■□□□ 1.71
NKX3-2P78367 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC25.74■■□□□ 1.71
NKX3-2P78367 AC009102.2-201ENST00000606772 1639 ntBASIC25.74■■□□□ 1.71
NKX3-2P78367 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
NKX3-2P78367 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
NKX3-2P78367 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
NKX3-2P78367 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC25.73■■□□□ 1.71
NKX3-2P78367 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.73■■□□□ 1.71
NKX3-2P78367 AC027682.1-201ENST00000562846 899 ntBASIC25.73■■□□□ 1.71
NKX3-2P78367 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.73■■□□□ 1.71
NKX3-2P78367 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC25.73■■□□□ 1.71
NKX3-2P78367 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
NKX3-2P78367 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
NKX3-2P78367 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
NKX3-2P78367 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.72■■□□□ 1.71
NKX3-2P78367 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.72■■□□□ 1.71
NKX3-2P78367 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
NKX3-2P78367 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
NKX3-2P78367 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC25.71■■□□□ 1.71
NKX3-2P78367 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
NKX3-2P78367 AC092803.2-201ENST00000564287 1899 ntBASIC25.71■■□□□ 1.71
NKX3-2P78367 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC25.71■■□□□ 1.71
NKX3-2P78367 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC25.71■■□□□ 1.71
NKX3-2P78367 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC25.71■■□□□ 1.71
NKX3-2P78367 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC25.71■■□□□ 1.71
NKX3-2P78367 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.71■■□□□ 1.71
NKX3-2P78367 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
NKX3-2P78367 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.71
NKX3-2P78367 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC25.7■■□□□ 1.71
NKX3-2P78367 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC25.7■■□□□ 1.7
NKX3-2P78367 C17orf82-201ENST00000623772 1530 ntBASIC25.7■■□□□ 1.7
NKX3-2P78367 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC25.7■■□□□ 1.7
NKX3-2P78367 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
NKX3-2P78367 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
NKX3-2P78367 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC25.7■■□□□ 1.7
NKX3-2P78367 ANKRD20A6P-201ENST00000618763 204 ntBASIC25.7■■□□□ 1.7
NKX3-2P78367 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.7
NKX3-2P78367 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
NKX3-2P78367 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NKX3-2P78367 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
NKX3-2P78367 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.69■■□□□ 1.7
NKX3-2P78367 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
NKX3-2P78367 SLC6A10P-202ENST00000431994 2058 ntBASIC25.68■■□□□ 1.7
NKX3-2P78367 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
NKX3-2P78367 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
NKX3-2P78367 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
NKX3-2P78367 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC25.68■■□□□ 1.7
NKX3-2P78367 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
NKX3-2P78367 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
NKX3-2P78367 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NKX3-2P78367 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
NKX3-2P78367 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.67■■□□□ 1.7
NKX3-2P78367 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.67■■□□□ 1.7
NKX3-2P78367 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.67■■□□□ 1.7
NKX3-2P78367 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC25.67■■□□□ 1.7
NKX3-2P78367 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.67■■□□□ 1.7
NKX3-2P78367 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.67■■□□□ 1.7
NKX3-2P78367 AC136469.2-201ENST00000623944 1028 ntBASIC25.67■■□□□ 1.7
NKX3-2P78367 AC241377.3-202ENST00000626088 1088 ntBASIC25.67■■□□□ 1.7
NKX3-2P78367 AC241585.3-202ENST00000628937 1088 ntBASIC25.67■■□□□ 1.7
NKX3-2P78367 AC245100.8-202ENST00000629247 1058 ntBASIC25.67■■□□□ 1.7
NKX3-2P78367 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.67■■□□□ 1.7
NKX3-2P78367 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
NKX3-2P78367 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NKX3-2P78367 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC25.66■■□□□ 1.7
NKX3-2P78367 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
NKX3-2P78367 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
NKX3-2P78367 PLD4-205ENST00000553861 667 ntTSL 2 BASIC25.66■■□□□ 1.7
NKX3-2P78367 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
NKX3-2P78367 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC25.66■■□□□ 1.7
NKX3-2P78367 AC087623.3-201ENST00000607047 1098 ntBASIC25.66■■□□□ 1.7
NKX3-2P78367 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
NKX3-2P78367 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
NKX3-2P78367 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NKX3-2P78367 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NKX3-2P78367 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
NKX3-2P78367 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
NKX3-2P78367 AL022069.1-201ENST00000568025 1636 ntBASIC25.65■■□□□ 1.7
NKX3-2P78367 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
NKX3-2P78367 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC25.65■■□□□ 1.7
NKX3-2P78367 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NKX3-2P78367 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NKX3-2P78367 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.64■■□□□ 1.7
NKX3-2P78367 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC25.64■■□□□ 1.7
NKX3-2P78367 PARL-206ENST00000435888 1098 ntTSL 5 BASIC25.64■■□□□ 1.7
NKX3-2P78367 IRS3P-201ENST00000223076 1006 ntBASIC25.63■■□□□ 1.69
NKX3-2P78367 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NKX3-2P78367 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
NKX3-2P78367 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC25.63■■□□□ 1.69
NKX3-2P78367 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
NKX3-2P78367 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NKX3-2P78367 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
NKX3-2P78367 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
NKX3-2P78367 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
NKX3-2P78367 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms