Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
HNF4AP41235 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
HNF4AP41235 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HNF4AP41235 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HNF4AP41235 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HNF4AP41235 KRT18P24-201ENST00000344739 1156 ntBASIC22.24■■□□□ 1.15
HNF4AP41235 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HNF4AP41235 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HNF4AP41235 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HNF4AP41235 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
HNF4AP41235 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HNF4AP41235 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
HNF4AP41235 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
HNF4AP41235 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.22■■□□□ 1.15
HNF4AP41235 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HNF4AP41235 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HNF4AP41235 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HNF4AP41235 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC22.22■■□□□ 1.15
HNF4AP41235 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.22■■□□□ 1.15
HNF4AP41235 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HNF4AP41235 AL031848.2-201ENST00000607670 837 ntBASIC22.22■■□□□ 1.15
HNF4AP41235 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HNF4AP41235 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.22■■□□□ 1.15
HNF4AP41235 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HNF4AP41235 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HNF4AP41235 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
HNF4AP41235 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
HNF4AP41235 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC22.21■■□□□ 1.15
HNF4AP41235 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC22.21■■□□□ 1.15
HNF4AP41235 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC22.21■■□□□ 1.15
HNF4AP41235 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
HNF4AP41235 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HNF4AP41235 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
HNF4AP41235 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HNF4AP41235 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
HNF4AP41235 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HNF4AP41235 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.15
HNF4AP41235 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
HNF4AP41235 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HNF4AP41235 ABCB10P4-201ENST00000566803 2184 ntBASIC22.2■■□□□ 1.14
HNF4AP41235 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HNF4AP41235 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
HNF4AP41235 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HNF4AP41235 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
HNF4AP41235 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
HNF4AP41235 AL022069.1-201ENST00000568025 1636 ntBASIC22.19■■□□□ 1.14
HNF4AP41235 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
HNF4AP41235 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
HNF4AP41235 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HNF4AP41235 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC22.19■■□□□ 1.14
HNF4AP41235 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HNF4AP41235 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
HNF4AP41235 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.18■■□□□ 1.14
HNF4AP41235 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.18■■□□□ 1.14
HNF4AP41235 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HNF4AP41235 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.18■■□□□ 1.14
HNF4AP41235 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HNF4AP41235 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.18■■□□□ 1.14
HNF4AP41235 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
HNF4AP41235 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC22.17■■□□□ 1.14
HNF4AP41235 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HNF4AP41235 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
HNF4AP41235 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HNF4AP41235 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HNF4AP41235 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.16■■□□□ 1.14
HNF4AP41235 MIR4281-201ENST00000580852 62 ntBASIC22.16■■□□□ 1.14
HNF4AP41235 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC22.16■■□□□ 1.14
HNF4AP41235 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HNF4AP41235 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HNF4AP41235 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.16■■□□□ 1.14
HNF4AP41235 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
HNF4AP41235 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
HNF4AP41235 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HNF4AP41235 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.15■■□□□ 1.14
HNF4AP41235 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.15■■□□□ 1.14
HNF4AP41235 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
HNF4AP41235 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.15■■□□□ 1.14
HNF4AP41235 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.15■■□□□ 1.14
HNF4AP41235 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HNF4AP41235 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.15■■□□□ 1.14
HNF4AP41235 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
HNF4AP41235 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HNF4AP41235 TK2-216ENST00000564917 1156 ntTSL 3 BASIC22.14■■□□□ 1.13
HNF4AP41235 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
HNF4AP41235 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
HNF4AP41235 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
HNF4AP41235 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HNF4AP41235 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
HNF4AP41235 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HNF4AP41235 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HNF4AP41235 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HNF4AP41235 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HNF4AP41235 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HNF4AP41235 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HNF4AP41235 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HNF4AP41235 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
HNF4AP41235 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.13■■□□□ 1.13
HNF4AP41235 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HNF4AP41235 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
HNF4AP41235 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC22.13■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms