Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
CIITAP33076 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CIITAP33076 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
CIITAP33076 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CIITAP33076 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
CIITAP33076 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CIITAP33076 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC26.09■■□□□ 1.77
CIITAP33076 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CIITAP33076 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CIITAP33076 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
CIITAP33076 AC135731.1-201ENST00000569415 2548 ntBASIC26.09■■□□□ 1.77
CIITAP33076 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
CIITAP33076 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CIITAP33076 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CIITAP33076 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CIITAP33076 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
CIITAP33076 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.08■■□□□ 1.77
CIITAP33076 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC26.08■■□□□ 1.77
CIITAP33076 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
CIITAP33076 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
CIITAP33076 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC26.07■■□□□ 1.76
CIITAP33076 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC26.07■■□□□ 1.76
CIITAP33076 AL139125.2-201ENST00000623134 1869 ntBASIC26.07■■□□□ 1.76
CIITAP33076 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC26.07■■□□□ 1.76
CIITAP33076 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC26.07■■□□□ 1.76
CIITAP33076 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CIITAP33076 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC26.07■■□□□ 1.76
CIITAP33076 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
CIITAP33076 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC26.06■■□□□ 1.76
CIITAP33076 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
CIITAP33076 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CIITAP33076 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CIITAP33076 MIR6724-1-201ENST00000616420 92 ntBASIC26.06■■□□□ 1.76
CIITAP33076 MIR6724-2-201ENST00000616483 92 ntBASIC26.06■■□□□ 1.76
CIITAP33076 MIR6724-4-201ENST00000617390 92 ntBASIC26.06■■□□□ 1.76
CIITAP33076 MIR6724-3-201ENST00000622482 92 ntBASIC26.06■■□□□ 1.76
CIITAP33076 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC26.06■■□□□ 1.76
CIITAP33076 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CIITAP33076 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CIITAP33076 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CIITAP33076 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.05■■□□□ 1.76
CIITAP33076 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CIITAP33076 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CIITAP33076 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CIITAP33076 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CIITAP33076 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CIITAP33076 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CIITAP33076 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC26.04■■□□□ 1.76
CIITAP33076 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC26.04■■□□□ 1.76
CIITAP33076 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CIITAP33076 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CIITAP33076 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CIITAP33076 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
CIITAP33076 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
CIITAP33076 CD72-202ENST00000378430 585 ntTSL 3 BASIC26.03■■□□□ 1.76
CIITAP33076 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CIITAP33076 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC26.02■■□□□ 1.76
CIITAP33076 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
CIITAP33076 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.02■■□□□ 1.76
CIITAP33076 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC26.02■■□□□ 1.76
CIITAP33076 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CIITAP33076 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
CIITAP33076 AC141586.4-201ENST00000624558 1573 ntBASIC26.02■■□□□ 1.76
CIITAP33076 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CIITAP33076 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CIITAP33076 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
CIITAP33076 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC26.01■■□□□ 1.75
CIITAP33076 LINC00543-201ENST00000567234 1845 ntBASIC26■■□□□ 1.75
CIITAP33076 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC26■■□□□ 1.75
CIITAP33076 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CIITAP33076 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CIITAP33076 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
CIITAP33076 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CIITAP33076 TFPT-201ENST00000391757 774 ntTSL 5 BASIC25.99■■□□□ 1.75
CIITAP33076 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
CIITAP33076 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC25.99■■□□□ 1.75
CIITAP33076 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC25.99■■□□□ 1.75
CIITAP33076 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CIITAP33076 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CIITAP33076 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
CIITAP33076 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CIITAP33076 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
CIITAP33076 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC25.98■■□□□ 1.75
CIITAP33076 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC25.98■■□□□ 1.75
CIITAP33076 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.98■■□□□ 1.75
CIITAP33076 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC25.98■■□□□ 1.75
CIITAP33076 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CIITAP33076 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CIITAP33076 REST-206ENST00000612429 1376 ntTSL 5 BASIC25.97■■□□□ 1.75
CIITAP33076 REST-207ENST00000616975 1370 ntTSL 5 BASIC25.97■■□□□ 1.75
CIITAP33076 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CIITAP33076 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CIITAP33076 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CIITAP33076 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CIITAP33076 MIR3621-201ENST00000580529 85 ntBASIC25.97■■□□□ 1.75
CIITAP33076 AL117332.1-201ENST00000622628 974 ntBASIC25.97■■□□□ 1.75
CIITAP33076 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC25.97■■□□□ 1.75
CIITAP33076 LINC01124-201ENST00000409786 2117 ntBASIC25.97■■□□□ 1.75
CIITAP33076 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC25.97■■□□□ 1.75
CIITAP33076 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC25.97■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms