Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.84■■□□□ 1.09
PTPN6P29350 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.84■■□□□ 1.09
PTPN6P29350 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
PTPN6P29350 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN6P29350 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.83■■□□□ 1.09
PTPN6P29350 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PTPN6P29350 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.83■■□□□ 1.09
PTPN6P29350 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PTPN6P29350 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTPN6P29350 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.83■■□□□ 1.08
PTPN6P29350 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
PTPN6P29350 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
PTPN6P29350 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.82■■□□□ 1.08
PTPN6P29350 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN6P29350 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
PTPN6P29350 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN6P29350 AC010980.1-201ENST00000587192 1142 ntBASIC21.82■■□□□ 1.08
PTPN6P29350 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN6P29350 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
PTPN6P29350 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.82■■□□□ 1.08
PTPN6P29350 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN6P29350 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN6P29350 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN6P29350 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN6P29350 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
PTPN6P29350 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN6P29350 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
PTPN6P29350 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN6P29350 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN6P29350 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.81■■□□□ 1.08
PTPN6P29350 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN6P29350 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN6P29350 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.81■■□□□ 1.08
PTPN6P29350 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN6P29350 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN6P29350 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN6P29350 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN6P29350 C9orf163-202ENST00000624034 2573 ntBASIC21.8■■□□□ 1.08
PTPN6P29350 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
PTPN6P29350 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN6P29350 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
PTPN6P29350 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN6P29350 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.8■■□□□ 1.08
PTPN6P29350 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.8■■□□□ 1.08
PTPN6P29350 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.8■■□□□ 1.08
PTPN6P29350 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.8■■□□□ 1.08
PTPN6P29350 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.79■■□□□ 1.08
PTPN6P29350 AC090877.2-201ENST00000558441 1738 ntBASIC21.79■■□□□ 1.08
PTPN6P29350 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN6P29350 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN6P29350 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN6P29350 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
PTPN6P29350 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN6P29350 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN6P29350 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN6P29350 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.78■■□□□ 1.08
PTPN6P29350 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PTPN6P29350 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.78■■□□□ 1.08
PTPN6P29350 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PTPN6P29350 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PTPN6P29350 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.78■■□□□ 1.08
PTPN6P29350 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PTPN6P29350 PVT1_1.1-201ENST00000615125 194 ntBASIC21.78■■□□□ 1.08
PTPN6P29350 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PTPN6P29350 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
PTPN6P29350 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
PTPN6P29350 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.77■■□□□ 1.08
PTPN6P29350 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
PTPN6P29350 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
PTPN6P29350 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.77■■□□□ 1.08
PTPN6P29350 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
PTPN6P29350 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
PTPN6P29350 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN6P29350 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN6P29350 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.76■■□□□ 1.07
PTPN6P29350 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN6P29350 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN6P29350 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN6P29350 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.76■■□□□ 1.07
PTPN6P29350 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
PTPN6P29350 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN6P29350 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN6P29350 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN6P29350 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN6P29350 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTPN6P29350 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTPN6P29350 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTPN6P29350 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.75■■□□□ 1.07
PTPN6P29350 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PTPN6P29350 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PTPN6P29350 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PTPN6P29350 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PTPN6P29350 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
PTPN6P29350 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PTPN6P29350 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PTPN6P29350 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PTPN6P29350 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.74■■□□□ 1.07
PTPN6P29350 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PTPN6P29350 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.74■■□□□ 1.07
PTPN6P29350 LONRF2P2-201ENST00000439212 571 ntBASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms