Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
HLA-DQB2P05538 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.38■■□□□ 1.33
HLA-DQB2P05538 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
HLA-DQB2P05538 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.38■■□□□ 1.33
HLA-DQB2P05538 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
HLA-DQB2P05538 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HLA-DQB2P05538 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
HLA-DQB2P05538 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
HLA-DQB2P05538 AL161729.1-201ENST00000604104 1402 ntBASIC23.38■■□□□ 1.33
HLA-DQB2P05538 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC23.38■■□□□ 1.33
HLA-DQB2P05538 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.38■■□□□ 1.33
HLA-DQB2P05538 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HLA-DQB2P05538 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
HLA-DQB2P05538 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HLA-DQB2P05538 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
HLA-DQB2P05538 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.37■■□□□ 1.33
HLA-DQB2P05538 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HLA-DQB2P05538 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HLA-DQB2P05538 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HLA-DQB2P05538 AC009299.2-201ENST00000482477 511 ntBASIC23.37■■□□□ 1.33
HLA-DQB2P05538 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
HLA-DQB2P05538 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC23.37■■□□□ 1.33
HLA-DQB2P05538 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HLA-DQB2P05538 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
HLA-DQB2P05538 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HLA-DQB2P05538 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HLA-DQB2P05538 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
HLA-DQB2P05538 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.36■■□□□ 1.33
HLA-DQB2P05538 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.36■■□□□ 1.33
HLA-DQB2P05538 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.36■■□□□ 1.33
HLA-DQB2P05538 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
HLA-DQB2P05538 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.35■■□□□ 1.33
HLA-DQB2P05538 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
HLA-DQB2P05538 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HLA-DQB2P05538 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.35■■□□□ 1.33
HLA-DQB2P05538 BX664725.1-201ENST00000438252 379 ntBASIC23.35■■□□□ 1.33
HLA-DQB2P05538 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.35■■□□□ 1.33
HLA-DQB2P05538 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.35■■□□□ 1.33
HLA-DQB2P05538 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HLA-DQB2P05538 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.35■■□□□ 1.33
HLA-DQB2P05538 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.35■■□□□ 1.33
HLA-DQB2P05538 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.35■■□□□ 1.33
HLA-DQB2P05538 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HLA-DQB2P05538 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.35■■□□□ 1.33
HLA-DQB2P05538 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
HLA-DQB2P05538 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
HLA-DQB2P05538 AC021242.3-201ENST00000607598 1377 ntBASIC23.34■■□□□ 1.33
HLA-DQB2P05538 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HLA-DQB2P05538 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
HLA-DQB2P05538 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC23.33■■□□□ 1.33
HLA-DQB2P05538 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
HLA-DQB2P05538 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DQB2P05538 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DQB2P05538 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
HLA-DQB2P05538 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DQB2P05538 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.33■■□□□ 1.33
HLA-DQB2P05538 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.33■■□□□ 1.33
HLA-DQB2P05538 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.33■■□□□ 1.33
HLA-DQB2P05538 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.33■■□□□ 1.33
HLA-DQB2P05538 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
HLA-DQB2P05538 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.33■■□□□ 1.32
HLA-DQB2P05538 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
HLA-DQB2P05538 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.32■■□□□ 1.32
HLA-DQB2P05538 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HLA-DQB2P05538 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HLA-DQB2P05538 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DQB2P05538 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.31■■□□□ 1.32
HLA-DQB2P05538 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DQB2P05538 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DQB2P05538 AC004448.1-201ENST00000458332 883 ntBASIC23.31■■□□□ 1.32
HLA-DQB2P05538 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DQB2P05538 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.31■■□□□ 1.32
HLA-DQB2P05538 SNX5-217ENST00000606557 1087 ntBASIC23.31■■□□□ 1.32
HLA-DQB2P05538 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DQB2P05538 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DQB2P05538 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DQB2P05538 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DQB2P05538 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DQB2P05538 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DQB2P05538 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HLA-DQB2P05538 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
HLA-DQB2P05538 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.3■■□□□ 1.32
HLA-DQB2P05538 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
HLA-DQB2P05538 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
HLA-DQB2P05538 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
HLA-DQB2P05538 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HLA-DQB2P05538 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.29■■□□□ 1.32
HLA-DQB2P05538 Z92544.1-202ENST00000571933 1220 ntBASIC23.29■■□□□ 1.32
HLA-DQB2P05538 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.29■■□□□ 1.32
HLA-DQB2P05538 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
HLA-DQB2P05538 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HLA-DQB2P05538 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HLA-DQB2P05538 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HLA-DQB2P05538 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms