Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDGFAP04085 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDGFAP04085 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDGFAP04085 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDGFAP04085 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
PDGFAP04085 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
PDGFAP04085 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
PDGFAP04085 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PDGFAP04085 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.4■■□□□ 1.02
PDGFAP04085 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PDGFAP04085 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.4■■□□□ 1.02
PDGFAP04085 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PDGFAP04085 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.39■■□□□ 1.02
PDGFAP04085 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PDGFAP04085 EDA-201ENST00000338901 1233 ntBASIC21.39■■□□□ 1.01
PDGFAP04085 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
PDGFAP04085 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.39■■□□□ 1.01
PDGFAP04085 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
PDGFAP04085 AL355001.2-201ENST00000620617 1191 ntBASIC21.39■■□□□ 1.01
PDGFAP04085 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PDGFAP04085 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.39■■□□□ 1.01
PDGFAP04085 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDGFAP04085 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDGFAP04085 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
PDGFAP04085 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.38■■□□□ 1.01
PDGFAP04085 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.38■■□□□ 1.01
PDGFAP04085 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDGFAP04085 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
PDGFAP04085 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PDGFAP04085 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDGFAP04085 AC105265.2-201ENST00000467189 838 ntBASIC21.38■■□□□ 1.01
PDGFAP04085 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.38■■□□□ 1.01
PDGFAP04085 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDGFAP04085 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDGFAP04085 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
PDGFAP04085 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
PDGFAP04085 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PDGFAP04085 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.37■■□□□ 1.01
PDGFAP04085 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PDGFAP04085 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.37■■□□□ 1.01
PDGFAP04085 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.37■■□□□ 1.01
PDGFAP04085 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.37■■□□□ 1.01
PDGFAP04085 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.37■■□□□ 1.01
PDGFAP04085 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PDGFAP04085 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PDGFAP04085 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PDGFAP04085 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.36■■□□□ 1.01
PDGFAP04085 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PDGFAP04085 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PDGFAP04085 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PDGFAP04085 AF213884.3-201ENST00000563833 479 ntBASIC21.36■■□□□ 1.01
PDGFAP04085 MIR5787-201ENST00000611784 55 ntBASIC21.36■■□□□ 1.01
PDGFAP04085 AL136967.2-201ENST00000623968 743 ntBASIC21.36■■□□□ 1.01
PDGFAP04085 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PDGFAP04085 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PDGFAP04085 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PDGFAP04085 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.35■■□□□ 1.01
PDGFAP04085 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.35■■□□□ 1.01
PDGFAP04085 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PDGFAP04085 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
PDGFAP04085 AC104564.3-201ENST00000582367 638 ntBASIC21.35■■□□□ 1.01
PDGFAP04085 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PDGFAP04085 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
PDGFAP04085 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.35■■□□□ 1.01
PDGFAP04085 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.35■■□□□ 1.01
PDGFAP04085 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PDGFAP04085 AC096887.2-201ENST00000623443 1957 ntBASIC21.34■■□□□ 1.01
PDGFAP04085 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
PDGFAP04085 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.34■■□□□ 1.01
PDGFAP04085 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PDGFAP04085 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.34■■□□□ 1.01
PDGFAP04085 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.34■■□□□ 1.01
PDGFAP04085 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
PDGFAP04085 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PDGFAP04085 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
PDGFAP04085 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.33■■□□□ 1.01
PDGFAP04085 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
PDGFAP04085 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.33■■□□□ 1.01
PDGFAP04085 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.33■■□□□ 1
PDGFAP04085 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDGFAP04085 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDGFAP04085 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
PDGFAP04085 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.32■■□□□ 1
PDGFAP04085 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDGFAP04085 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.32■■□□□ 1
PDGFAP04085 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.32■■□□□ 1
PDGFAP04085 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.32■■□□□ 1
PDGFAP04085 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
PDGFAP04085 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.32■■□□□ 1
PDGFAP04085 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.32■■□□□ 1
PDGFAP04085 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDGFAP04085 ERN1-208ENST00000606895 2068 ntBASIC21.32■■□□□ 1
PDGFAP04085 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
PDGFAP04085 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.31■■□□□ 1
PDGFAP04085 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.31■■□□□ 1
PDGFAP04085 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
PDGFAP04085 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
PDGFAP04085 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
PDGFAP04085 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
PDGFAP04085 MIR939-201ENST00000401314 82 ntBASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms