Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC28.55■■■□□ 2.16
COL4A1P02462 CEBPA-AS1-201ENST00000592982 2198 ntBASIC28.55■■■□□ 2.16
COL4A1P02462 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC28.55■■■□□ 2.16
COL4A1P02462 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
COL4A1P02462 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC28.55■■■□□ 2.16
COL4A1P02462 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC28.54■■■□□ 2.16
COL4A1P02462 AC142381.2-201ENST00000566120 298 ntBASIC28.54■■■□□ 2.16
COL4A1P02462 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC28.54■■■□□ 2.16
COL4A1P02462 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
COL4A1P02462 SRD5A1P1-201ENST00000442297 786 ntBASIC28.54■■■□□ 2.16
COL4A1P02462 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
COL4A1P02462 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.16
COL4A1P02462 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC28.54■■■□□ 2.16
COL4A1P02462 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL4A1P02462 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC28.53■■■□□ 2.16
COL4A1P02462 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC28.53■■■□□ 2.16
COL4A1P02462 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC28.53■■■□□ 2.16
COL4A1P02462 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC28.52■■■□□ 2.16
COL4A1P02462 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC28.52■■■□□ 2.16
COL4A1P02462 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
COL4A1P02462 AF213884.3-201ENST00000563833 479 ntBASIC28.52■■■□□ 2.16
COL4A1P02462 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC28.52■■■□□ 2.16
COL4A1P02462 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
COL4A1P02462 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
COL4A1P02462 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC28.52■■■□□ 2.16
COL4A1P02462 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC28.52■■■□□ 2.16
COL4A1P02462 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC28.52■■■□□ 2.16
COL4A1P02462 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
COL4A1P02462 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
COL4A1P02462 AC005703.6-201ENST00000623265 1329 ntBASIC28.51■■■□□ 2.15
COL4A1P02462 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
COL4A1P02462 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.15
COL4A1P02462 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL4A1P02462 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL4A1P02462 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL4A1P02462 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC28.5■■■□□ 2.15
COL4A1P02462 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
COL4A1P02462 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
COL4A1P02462 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC28.49■■■□□ 2.15
COL4A1P02462 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
COL4A1P02462 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
COL4A1P02462 MIR939-201ENST00000401314 82 ntBASIC28.49■■■□□ 2.15
COL4A1P02462 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
COL4A1P02462 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
COL4A1P02462 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
COL4A1P02462 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC28.49■■■□□ 2.15
COL4A1P02462 AC105265.2-201ENST00000467189 838 ntBASIC28.48■■■□□ 2.15
COL4A1P02462 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
COL4A1P02462 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC28.48■■■□□ 2.15
COL4A1P02462 LGR4-203ENST00000480977 492 ntTSL 2 BASIC28.48■■■□□ 2.15
COL4A1P02462 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC28.47■■■□□ 2.15
COL4A1P02462 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
COL4A1P02462 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC28.47■■■□□ 2.15
COL4A1P02462 LSR-205ENST00000427250 1606 ntTSL 2 BASIC28.47■■■□□ 2.15
COL4A1P02462 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
COL4A1P02462 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
COL4A1P02462 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC28.47■■■□□ 2.15
COL4A1P02462 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC28.47■■■□□ 2.15
COL4A1P02462 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC28.47■■■□□ 2.15
COL4A1P02462 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC28.47■■■□□ 2.15
COL4A1P02462 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
COL4A1P02462 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
COL4A1P02462 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC28.46■■■□□ 2.15
COL4A1P02462 SERBP1P1-201ENST00000396021 1160 ntBASIC28.46■■■□□ 2.15
COL4A1P02462 PTMA-205ENST00000410064 814 ntTSL 2 BASIC28.46■■■□□ 2.15
COL4A1P02462 GRAMD4P4-201ENST00000613563 1115 ntBASIC28.46■■■□□ 2.15
COL4A1P02462 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC28.46■■■□□ 2.15
COL4A1P02462 EDA-201ENST00000338901 1233 ntBASIC28.45■■■□□ 2.15
COL4A1P02462 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC28.45■■■□□ 2.15
COL4A1P02462 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
COL4A1P02462 PTCHD3P2-201ENST00000424937 1205 ntBASIC28.45■■■□□ 2.15
COL4A1P02462 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.15
COL4A1P02462 AL136967.2-201ENST00000623968 743 ntBASIC28.45■■■□□ 2.15
COL4A1P02462 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
COL4A1P02462 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.14
COL4A1P02462 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
COL4A1P02462 MIR4767-201ENST00000582827 78 ntBASIC28.45■■■□□ 2.14
COL4A1P02462 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC28.44■■■□□ 2.14
COL4A1P02462 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC28.44■■■□□ 2.14
COL4A1P02462 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
COL4A1P02462 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
COL4A1P02462 AC006455.2-201ENST00000429931 906 ntBASIC28.44■■■□□ 2.14
COL4A1P02462 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC28.44■■■□□ 2.14
COL4A1P02462 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
COL4A1P02462 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC28.44■■■□□ 2.14
COL4A1P02462 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC28.43■■■□□ 2.14
COL4A1P02462 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
COL4A1P02462 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC28.43■■■□□ 2.14
COL4A1P02462 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
COL4A1P02462 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC28.43■■■□□ 2.14
COL4A1P02462 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC28.43■■■□□ 2.14
COL4A1P02462 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
COL4A1P02462 AC009102.2-201ENST00000606772 1639 ntBASIC28.43■■■□□ 2.14
COL4A1P02462 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
COL4A1P02462 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC28.43■■■□□ 2.14
COL4A1P02462 AC145676.1-201ENST00000514988 2004 ntBASIC28.43■■■□□ 2.14
COL4A1P02462 REST-206ENST00000612429 1376 ntTSL 5 BASIC28.42■■■□□ 2.14
COL4A1P02462 REST-207ENST00000616975 1370 ntTSL 5 BASIC28.42■■■□□ 2.14
COL4A1P02462 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
COL4A1P02462 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC28.42■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms