Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC33.09■■■□□ 2.89
NPHP4O75161 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
NPHP4O75161 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC33.08■■■□□ 2.89
NPHP4O75161 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC33.08■■■□□ 2.89
NPHP4O75161 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC33.07■■■□□ 2.88
NPHP4O75161 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
NPHP4O75161 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC33.07■■■□□ 2.88
NPHP4O75161 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC33.06■■■□□ 2.88
NPHP4O75161 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC33.06■■■□□ 2.88
NPHP4O75161 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC33.06■■■□□ 2.88
NPHP4O75161 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC33.06■■■□□ 2.88
NPHP4O75161 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC33.06■■■□□ 2.88
NPHP4O75161 C17orf82-201ENST00000623772 1530 ntBASIC33.06■■■□□ 2.88
NPHP4O75161 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC33.06■■■□□ 2.88
NPHP4O75161 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC33.05■■■□□ 2.88
NPHP4O75161 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC33.05■■■□□ 2.88
NPHP4O75161 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC33.04■■■□□ 2.88
NPHP4O75161 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC33.04■■■□□ 2.88
NPHP4O75161 AC123595.1-201ENST00000440769 1046 ntBASIC33.04■■■□□ 2.88
NPHP4O75161 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC33.04■■■□□ 2.88
NPHP4O75161 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC33.04■■■□□ 2.88
NPHP4O75161 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
NPHP4O75161 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
NPHP4O75161 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC33.03■■■□□ 2.88
NPHP4O75161 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
NPHP4O75161 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC33.03■■■□□ 2.88
NPHP4O75161 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
NPHP4O75161 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC33.03■■■□□ 2.88
NPHP4O75161 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
NPHP4O75161 NME4-202ENST00000382940 766 ntTSL 3 BASIC33.02■■■□□ 2.88
NPHP4O75161 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC33.02■■■□□ 2.88
NPHP4O75161 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC33.02■■■□□ 2.88
NPHP4O75161 NME4-211ENST00000620944 1193 ntTSL 2 BASIC33.02■■■□□ 2.88
NPHP4O75161 AC241377.3-202ENST00000626088 1088 ntBASIC33.02■■■□□ 2.88
NPHP4O75161 AC241585.3-202ENST00000628937 1088 ntBASIC33.02■■■□□ 2.88
NPHP4O75161 AC245100.8-202ENST00000629247 1058 ntBASIC33.02■■■□□ 2.88
NPHP4O75161 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC33.02■■■□□ 2.88
NPHP4O75161 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
NPHP4O75161 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC33.01■■■□□ 2.88
NPHP4O75161 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC33.01■■■□□ 2.88
NPHP4O75161 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC33.01■■■□□ 2.87
NPHP4O75161 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC33.01■■■□□ 2.87
NPHP4O75161 ME3-201ENST00000323418 1068 ntTSL 5 BASIC33.01■■■□□ 2.87
NPHP4O75161 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC33.01■■■□□ 2.87
NPHP4O75161 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
NPHP4O75161 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC33■■■□□ 2.87
NPHP4O75161 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC33■■■□□ 2.87
NPHP4O75161 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC33■■■□□ 2.87
NPHP4O75161 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
NPHP4O75161 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
NPHP4O75161 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
NPHP4O75161 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
NPHP4O75161 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC32.97■■■□□ 2.87
NPHP4O75161 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
NPHP4O75161 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC32.97■■■□□ 2.87
NPHP4O75161 MIR3181-201ENST00000578512 73 ntBASIC32.97■■■□□ 2.87
NPHP4O75161 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC32.97■■■□□ 2.87
NPHP4O75161 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC32.97■■■□□ 2.87
NPHP4O75161 TSPY26P-201ENST00000476365 1326 ntBASIC32.97■■■□□ 2.87
NPHP4O75161 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC32.96■■■□□ 2.87
NPHP4O75161 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC32.96■■■□□ 2.87
NPHP4O75161 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC32.96■■■□□ 2.87
NPHP4O75161 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC32.96■■■□□ 2.87
NPHP4O75161 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC32.95■■■□□ 2.87
NPHP4O75161 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
NPHP4O75161 AL358852.1-201ENST00000623174 1268 ntBASIC32.95■■■□□ 2.87
NPHP4O75161 AC131274.2-201ENST00000580697 1507 ntBASIC32.95■■■□□ 2.87
NPHP4O75161 ESRRAP2-201ENST00000418437 1549 ntBASIC32.94■■■□□ 2.86
NPHP4O75161 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC32.94■■■□□ 2.86
NPHP4O75161 CCDC92B-201ENST00000575506 885 ntBASIC32.94■■■□□ 2.86
NPHP4O75161 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC32.94■■■□□ 2.86
NPHP4O75161 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
NPHP4O75161 AC126544.1-201ENST00000580842 1059 ntBASIC32.94■■■□□ 2.86
NPHP4O75161 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC32.94■■■□□ 2.86
NPHP4O75161 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
NPHP4O75161 ABHD17AP1-201ENST00000358206 933 ntBASIC32.93■■■□□ 2.86
NPHP4O75161 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC32.93■■■□□ 2.86
NPHP4O75161 GXYLT1P2-201ENST00000433312 1230 ntBASIC32.93■■■□□ 2.86
NPHP4O75161 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC32.93■■■□□ 2.86
NPHP4O75161 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
NPHP4O75161 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC32.93■■■□□ 2.86
NPHP4O75161 AC009086.3-201ENST00000623486 1008 ntBASIC32.93■■■□□ 2.86
NPHP4O75161 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
NPHP4O75161 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
NPHP4O75161 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC32.92■■■□□ 2.86
NPHP4O75161 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
NPHP4O75161 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
NPHP4O75161 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC32.92■■■□□ 2.86
NPHP4O75161 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
NPHP4O75161 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
NPHP4O75161 MIR6084-201ENST00000622012 110 ntBASIC32.92■■■□□ 2.86
NPHP4O75161 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
NPHP4O75161 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
NPHP4O75161 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC32.91■■■□□ 2.86
NPHP4O75161 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
NPHP4O75161 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC32.9■■■□□ 2.86
NPHP4O75161 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC32.9■■■□□ 2.86
NPHP4O75161 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC32.9■■■□□ 2.86
NPHP4O75161 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
NPHP4O75161 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms