Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC137695.1-201ENST00000604126 489 ntBASIC30.69■■■□□ 2.5
MSH5O43196 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
MSH5O43196 LINC00543-201ENST00000567234 1845 ntBASIC30.68■■■□□ 2.5
MSH5O43196 AC092803.2-201ENST00000564287 1899 ntBASIC30.68■■■□□ 2.5
MSH5O43196 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC30.68■■■□□ 2.5
MSH5O43196 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC30.68■■■□□ 2.5
MSH5O43196 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC30.68■■■□□ 2.5
MSH5O43196 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC30.68■■■□□ 2.5
MSH5O43196 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC30.68■■■□□ 2.5
MSH5O43196 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
MSH5O43196 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
MSH5O43196 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
MSH5O43196 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC30.68■■■□□ 2.5
MSH5O43196 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
MSH5O43196 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC30.67■■■□□ 2.5
MSH5O43196 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC30.67■■■□□ 2.5
MSH5O43196 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
MSH5O43196 AC079834.2-201ENST00000609776 1949 ntBASIC30.67■■■□□ 2.5
MSH5O43196 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC30.66■■■□□ 2.5
MSH5O43196 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC30.66■■■□□ 2.5
MSH5O43196 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC30.66■■■□□ 2.5
MSH5O43196 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
MSH5O43196 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
MSH5O43196 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
MSH5O43196 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
MSH5O43196 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.65■■■□□ 2.5
MSH5O43196 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
MSH5O43196 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
MSH5O43196 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
MSH5O43196 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
MSH5O43196 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
MSH5O43196 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC30.65■■■□□ 2.5
MSH5O43196 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC30.65■■■□□ 2.5
MSH5O43196 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC30.65■■■□□ 2.5
MSH5O43196 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC30.64■■■□□ 2.5
MSH5O43196 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
MSH5O43196 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
MSH5O43196 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
MSH5O43196 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC30.64■■■□□ 2.49
MSH5O43196 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
MSH5O43196 PBX2P1-201ENST00000493219 1291 ntBASIC30.63■■■□□ 2.49
MSH5O43196 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
MSH5O43196 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
MSH5O43196 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC30.63■■■□□ 2.49
MSH5O43196 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC30.62■■■□□ 2.49
MSH5O43196 AC142381.2-201ENST00000566120 298 ntBASIC30.62■■■□□ 2.49
MSH5O43196 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC30.62■■■□□ 2.49
MSH5O43196 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
MSH5O43196 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC30.62■■■□□ 2.49
MSH5O43196 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
MSH5O43196 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
MSH5O43196 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC30.61■■■□□ 2.49
MSH5O43196 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
MSH5O43196 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
MSH5O43196 LST1-206ENST00000376090 689 ntTSL 2 BASIC30.61■■■□□ 2.49
MSH5O43196 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
MSH5O43196 LST1-209ENST00000376096 565 ntTSL 2 BASIC30.61■■■□□ 2.49
MSH5O43196 LST1-210ENST00000376099 610 ntTSL 2 BASIC30.61■■■□□ 2.49
MSH5O43196 LST1-212ENST00000396101 459 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
MSH5O43196 LST1-214ENST00000418507 726 ntTSL 2 BASIC30.61■■■□□ 2.49
MSH5O43196 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
MSH5O43196 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
MSH5O43196 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
MSH5O43196 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
MSH5O43196 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
MSH5O43196 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
MSH5O43196 QDPR-206ENST00000508623 601 ntTSL 3 BASIC30.6■■■□□ 2.49
MSH5O43196 AC009948.4-201ENST00000604692 675 ntBASIC30.6■■■□□ 2.49
MSH5O43196 MED17-227ENST00000640521 2047 ntTSL 5 BASIC30.6■■■□□ 2.49
MSH5O43196 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
MSH5O43196 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
MSH5O43196 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
MSH5O43196 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
MSH5O43196 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
MSH5O43196 EXOG-217ENST00000630638 197 ntTSL 5 BASIC30.59■■■□□ 2.49
MSH5O43196 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
MSH5O43196 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
MSH5O43196 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
MSH5O43196 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC30.59■■■□□ 2.49
MSH5O43196 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
MSH5O43196 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC30.58■■■□□ 2.49
MSH5O43196 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC30.58■■■□□ 2.49
MSH5O43196 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
MSH5O43196 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC30.57■■■□□ 2.49
MSH5O43196 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
MSH5O43196 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
MSH5O43196 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
MSH5O43196 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC30.57■■■□□ 2.48
MSH5O43196 AL512631.2-201ENST00000604634 923 ntBASIC30.57■■■□□ 2.48
MSH5O43196 AC026790.2-201ENST00000606282 430 ntBASIC30.57■■■□□ 2.48
MSH5O43196 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
MSH5O43196 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
MSH5O43196 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC30.56■■■□□ 2.48
MSH5O43196 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
MSH5O43196 SENP5-202ENST00000419026 973 ntTSL 3 BASIC30.56■■■□□ 2.48
MSH5O43196 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC30.56■■■□□ 2.48
MSH5O43196 AC104564.3-201ENST00000582367 638 ntBASIC30.56■■■□□ 2.48
MSH5O43196 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
MSH5O43196 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
MSH5O43196 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 1292.9 ms