Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHKB-CPT1BH3BT56 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHKB-CPT1BH3BT56 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CHKB-CPT1BH3BT56 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHKB-CPT1BH3BT56 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHKB-CPT1BH3BT56 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
CHKB-CPT1BH3BT56 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHKB-CPT1BH3BT56 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
CHKB-CPT1BH3BT56 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
CHKB-CPT1BH3BT56 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
CHKB-CPT1BH3BT56 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHKB-CPT1BH3BT56 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
CHKB-CPT1BH3BT56 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
CHKB-CPT1BH3BT56 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHKB-CPT1BH3BT56 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHKB-CPT1BH3BT56 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CHKB-CPT1BH3BT56 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 CEBPA-AS1-201ENST00000592982 2198 ntBASIC12.93□□□□□ -0.34
CHKB-CPT1BH3BT56 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC12.92□□□□□ -0.34
CHKB-CPT1BH3BT56 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 AC007326.2-201ENST00000624224 7579 ntBASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CHKB-CPT1BH3BT56 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 AP004833.2-201ENST00000532228 1454 ntBASIC12.9□□□□□ -0.34
CHKB-CPT1BH3BT56 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHKB-CPT1BH3BT56 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHKB-CPT1BH3BT56 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHKB-CPT1BH3BT56 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHKB-CPT1BH3BT56 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC12.89□□□□□ -0.35
CHKB-CPT1BH3BT56 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CHKB-CPT1BH3BT56 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHKB-CPT1BH3BT56 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CHKB-CPT1BH3BT56 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHKB-CPT1BH3BT56 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CHKB-CPT1BH3BT56 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CHKB-CPT1BH3BT56 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms