Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AC090877.2-201ENST00000558441 1738 ntBASIC21■□□□□ 0.95
COL6A6A6NMZ7 REST-206ENST00000612429 1376 ntTSL 5 BASIC21■□□□□ 0.95
COL6A6A6NMZ7 REST-207ENST00000616975 1370 ntTSL 5 BASIC21■□□□□ 0.95
COL6A6A6NMZ7 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A6A6NMZ7 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21■□□□□ 0.95
COL6A6A6NMZ7 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL6A6A6NMZ7 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A6A6NMZ7 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A6A6NMZ7 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
COL6A6A6NMZ7 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.99■□□□□ 0.95
COL6A6A6NMZ7 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A6A6NMZ7 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A6A6NMZ7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A6A6NMZ7 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.99■□□□□ 0.95
COL6A6A6NMZ7 KRT18P14-201ENST00000534205 1250 ntBASIC20.99■□□□□ 0.95
COL6A6A6NMZ7 CCDC92B-201ENST00000575506 885 ntBASIC20.99■□□□□ 0.95
COL6A6A6NMZ7 FOXO3B-201ENST00000395675 1928 ntBASIC20.99■□□□□ 0.95
COL6A6A6NMZ7 C17orf82-201ENST00000623772 1530 ntBASIC20.99■□□□□ 0.95
COL6A6A6NMZ7 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A6A6NMZ7 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 AC142472.1-201ENST00000612013 1741 ntBASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A6A6NMZ7 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A6A6NMZ7 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A6A6NMZ7 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A6A6NMZ7 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.97■□□□□ 0.95
COL6A6A6NMZ7 AC012414.1-201ENST00000556676 535 ntBASIC20.97■□□□□ 0.95
COL6A6A6NMZ7 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.97■□□□□ 0.95
COL6A6A6NMZ7 TMEM191A-211ENST00000637163 1067 ntBASIC20.97■□□□□ 0.95
COL6A6A6NMZ7 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A6A6NMZ7 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A6A6NMZ7 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.97■□□□□ 0.95
COL6A6A6NMZ7 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
COL6A6A6NMZ7 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A6A6NMZ7 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A6A6NMZ7 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A6A6NMZ7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL6A6A6NMZ7 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.96■□□□□ 0.95
COL6A6A6NMZ7 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.96■□□□□ 0.95
COL6A6A6NMZ7 TERF1P2-201ENST00000583350 1212 ntBASIC20.95■□□□□ 0.95
COL6A6A6NMZ7 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.95■□□□□ 0.95
COL6A6A6NMZ7 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL6A6A6NMZ7 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL6A6A6NMZ7 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL6A6A6NMZ7 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.95■□□□□ 0.94
COL6A6A6NMZ7 AC241377.3-202ENST00000626088 1088 ntBASIC20.95■□□□□ 0.94
COL6A6A6NMZ7 AC241585.3-202ENST00000628937 1088 ntBASIC20.95■□□□□ 0.94
COL6A6A6NMZ7 AC245100.8-202ENST00000629247 1058 ntBASIC20.95■□□□□ 0.94
COL6A6A6NMZ7 AC009102.2-201ENST00000606772 1639 ntBASIC20.95■□□□□ 0.94
COL6A6A6NMZ7 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A6A6NMZ7 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A6A6NMZ7 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A6A6NMZ7 MIR572-201ENST00000384983 95 ntBASIC20.93■□□□□ 0.94
COL6A6A6NMZ7 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A6A6NMZ7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
COL6A6A6NMZ7 AC006455.2-201ENST00000429931 906 ntBASIC20.93■□□□□ 0.94
COL6A6A6NMZ7 CDCA4P2-201ENST00000441182 718 ntBASIC20.93■□□□□ 0.94
COL6A6A6NMZ7 NTF6G-201ENST00000591094 616 ntBASIC20.93■□□□□ 0.94
COL6A6A6NMZ7 AC104771.1-201ENST00000603335 964 ntBASIC20.93■□□□□ 0.94
COL6A6A6NMZ7 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A6A6NMZ7 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.92■□□□□ 0.94
COL6A6A6NMZ7 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL6A6A6NMZ7 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.92■□□□□ 0.94
COL6A6A6NMZ7 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL6A6A6NMZ7 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
COL6A6A6NMZ7 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL6A6A6NMZ7 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.92■□□□□ 0.94
COL6A6A6NMZ7 AC016769.1-201ENST00000409132 1010 ntBASIC20.92■□□□□ 0.94
COL6A6A6NMZ7 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.92■□□□□ 0.94
COL6A6A6NMZ7 AP004609.3-201ENST00000610705 1884 ntBASIC20.91■□□□□ 0.94
COL6A6A6NMZ7 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
COL6A6A6NMZ7 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A6A6NMZ7 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.91■□□□□ 0.94
COL6A6A6NMZ7 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.91■□□□□ 0.94
COL6A6A6NMZ7 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms