Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC24.86■■□□□ 1.57
SMIM28A0A1B0GU29 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
SMIM28A0A1B0GU29 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
SMIM28A0A1B0GU29 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
SMIM28A0A1B0GU29 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.86■■□□□ 1.57
SMIM28A0A1B0GU29 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC24.86■■□□□ 1.57
SMIM28A0A1B0GU29 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
SMIM28A0A1B0GU29 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
SMIM28A0A1B0GU29 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.86■■□□□ 1.57
SMIM28A0A1B0GU29 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
SMIM28A0A1B0GU29 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC24.86■■□□□ 1.57
SMIM28A0A1B0GU29 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 AP003733.4-201ENST00000623785 1697 ntBASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 AL136116.3-201ENST00000402907 1138 ntBASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SMIM28A0A1B0GU29 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
SMIM28A0A1B0GU29 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
SMIM28A0A1B0GU29 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
SMIM28A0A1B0GU29 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC24.84■■□□□ 1.57
SMIM28A0A1B0GU29 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC24.84■■□□□ 1.57
SMIM28A0A1B0GU29 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
SMIM28A0A1B0GU29 AC020928.2-201ENST00000588717 2197 ntBASIC24.84■■□□□ 1.57
SMIM28A0A1B0GU29 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 REST-206ENST00000612429 1376 ntTSL 5 BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 REST-207ENST00000616975 1370 ntTSL 5 BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
SMIM28A0A1B0GU29 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC24.83■■□□□ 1.56
SMIM28A0A1B0GU29 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.56
SMIM28A0A1B0GU29 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
SMIM28A0A1B0GU29 AC005703.6-201ENST00000623265 1329 ntBASIC24.83■■□□□ 1.56
SMIM28A0A1B0GU29 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
SMIM28A0A1B0GU29 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
SMIM28A0A1B0GU29 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC24.83■■□□□ 1.56
SMIM28A0A1B0GU29 AC138932.3-201ENST00000567634 1902 ntBASIC24.82■■□□□ 1.56
SMIM28A0A1B0GU29 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC24.82■■□□□ 1.56
SMIM28A0A1B0GU29 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC24.82■■□□□ 1.56
SMIM28A0A1B0GU29 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
SMIM28A0A1B0GU29 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.82■■□□□ 1.56
SMIM28A0A1B0GU29 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SMIM28A0A1B0GU29 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SMIM28A0A1B0GU29 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMIM28A0A1B0GU29 AC142381.3-201ENST00000568208 1670 ntBASIC24.81■■□□□ 1.56
SMIM28A0A1B0GU29 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMIM28A0A1B0GU29 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMIM28A0A1B0GU29 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
SMIM28A0A1B0GU29 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMIM28A0A1B0GU29 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMIM28A0A1B0GU29 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
SMIM28A0A1B0GU29 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMIM28A0A1B0GU29 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMIM28A0A1B0GU29 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMIM28A0A1B0GU29 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC24.8■■□□□ 1.56
SMIM28A0A1B0GU29 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
SMIM28A0A1B0GU29 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
SMIM28A0A1B0GU29 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SMIM28A0A1B0GU29 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC24.79■■□□□ 1.56
SMIM28A0A1B0GU29 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SMIM28A0A1B0GU29 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
SMIM28A0A1B0GU29 CD37-213ENST00000598095 1598 ntTSL 2 BASIC24.79■■□□□ 1.56
SMIM28A0A1B0GU29 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SMIM28A0A1B0GU29 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC24.79■■□□□ 1.56
SMIM28A0A1B0GU29 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SMIM28A0A1B0GU29 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
SMIM28A0A1B0GU29 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
SMIM28A0A1B0GU29 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
SMIM28A0A1B0GU29 AC135731.1-201ENST00000569415 2548 ntBASIC24.77■■□□□ 1.56
SMIM28A0A1B0GU29 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC24.77■■□□□ 1.56
SMIM28A0A1B0GU29 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SMIM28A0A1B0GU29 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SMIM28A0A1B0GU29 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC24.77■■□□□ 1.56
SMIM28A0A1B0GU29 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SMIM28A0A1B0GU29 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
SMIM28A0A1B0GU29 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SMIM28A0A1B0GU29 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SMIM28A0A1B0GU29 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
SMIM28A0A1B0GU29 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
SMIM28A0A1B0GU29 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC24.76■■□□□ 1.55
SMIM28A0A1B0GU29 AL161729.1-201ENST00000604104 1402 ntBASIC24.76■■□□□ 1.55
SMIM28A0A1B0GU29 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SMIM28A0A1B0GU29 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC24.76■■□□□ 1.55
SMIM28A0A1B0GU29 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms