Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 RN7SL692P-201ENST00000464677 288 ntBASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 AC026434.2-201ENST00000506094 1078 ntBASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 MTHFR-210ENST00000641407 2387 ntBASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
AP4E1Q9UPM8 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 ACTG1P3-201ENST00000431775 1114 ntBASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 AC012441.1-201ENST00000446669 685 ntBASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 RN7SL837P-201ENST00000463010 287 ntBASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 AP005018.1-201ENST00000525475 301 ntBASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 TDH-203ENST00000531764 1110 ntBASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 PTP4A1P2-201ENST00000546033 454 ntBASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 AL603764.1-201ENST00000636452 321 ntBASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
AP4E1Q9UPM8 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 MIR600HG-201ENST00000449175 5984 ntBASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms