Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 RPS19-201ENST00000221975 500 ntTSL 3 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 NME4-207ENST00000450036 985 ntTSL 3 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 CEND1P1-201ENST00000451006 455 ntBASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 KRT18P58-201ENST00000527480 1120 ntBASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 AC105021.1-202ENST00000570572 669 ntBASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 MTDHP5-201ENST00000598980 586 ntBASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CHMP1AQ9HD42 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 BX640514.1-201ENST00000583223 1918 ntBASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 AC136759.1-202ENST00000530858 2194 ntBASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 AC084364.1-201ENST00000551967 1556 ntBASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 MKNK2P1-201ENST00000437526 628 ntBASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 MTND6P24-201ENST00000440466 518 ntBASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 ALG1L8P-201ENST00000533887 760 ntBASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 AC018529.1-201ENST00000613063 361 ntBASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHMP1AQ9HD42 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 CICP11-201ENST00000434745 2827 ntBASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms