Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TPO-206ENST00000382269 1155 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 GAPDHP40-201ENST00000505218 1006 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 PNPLA6-220ENST00000600737 4195 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AL691432.1-201ENST00000596308 1422 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SNX18-202ENST00000343017 3140 ntBASIC4.72□□□□□ -1.65
SYNE1Q8NF91 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SPACA6P-AS-201ENST00000602324 3962 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SYTL2-206ENST00000389960 4299 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SLC4A5-204ENST00000377634 3814 ntAPPRIS P4 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 MINK1-203ENST00000453408 3939 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 DMBT1P1-203ENST00000636837 4628 ntBASIC4.72□□□□□ -1.65
SYNE1Q8NF91 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 PIGL-212ENST00000581006 554 ntTSL 4 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AL118558.3-201ENST00000607414 1079 ntBASIC4.72□□□□□ -1.65
SYNE1Q8NF91 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 FRMD6-AS1-201ENST00000617151 2229 ntBASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SERPINH1-202ENST00000524558 3391 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 GRM8-201ENST00000339582 4057 ntAPPRIS P3 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC020907.1-201ENST00000616460 1350 ntBASIC4.72□□□□□ -1.65
SYNE1Q8NF91 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 DERL2-202ENST00000570848 657 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SPAG5-201ENST00000321765 4040 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 135.4 ms