Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 RPL35P9-201ENST00000446059 350 ntBASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 HNRNPA1P42-201ENST00000458678 957 ntBASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 AC083801.1-201ENST00000491689 358 ntBASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 CISD2-202ENST00000503643 808 ntTSL 2 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 EMC4-208ENST00000559078 599 ntTSL 3 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 ELP5-212ENST00000574255 671 ntTSL 2 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 NAMA-206ENST00000605377 509 ntTSL 5 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 AC006058.4-201ENST00000624016 1670 ntBASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 MIR566-201ENST00000385187 94 ntBASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 OR51A9P-201ENST00000422578 911 ntBASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 AC023906.1-201ENST00000486386 453 ntBASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 AC026434.2-201ENST00000506094 1078 ntBASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 RNA5SP417-201ENST00000516459 108 ntBASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 AP005264.6-204ENST00000588436 719 ntBASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 AC138696.2-201ENST00000607376 223 ntBASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 AC011477.6-201ENST00000604980 1927 ntBASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMC1BQ8NDV3 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 SURF4-203ENST00000371991 715 ntTSL 3 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms