Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 AC113367.3-201ENST00000508316 1912 ntBASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 AC027601.5-201ENST00000624065 2482 ntBASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 AL139010.1-201ENST00000454878 894 ntBASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 INGX-202ENST00000489074 768 ntBASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 HNRNPUP1-201ENST00000554987 333 ntBASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 AC051619.7-201ENST00000568314 623 ntBASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 AC121493.1-201ENST00000602316 450 ntBASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 AC097359.3-201ENST00000603982 1210 ntBASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.21□□□□□ -0.13
DEPDC4Q8N2C3 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 CYP4F24P-201ENST00000586049 1580 ntBASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 AP3S2-216ENST00000617003 1561 ntBASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 AL136982.4-201ENST00000437689 1740 ntBASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
DEPDC4Q8N2C3 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 AL035696.2-201ENST00000407941 709 ntBASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 AC142381.1-201ENST00000426099 345 ntBASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 AC055876.3-201ENST00000431496 288 ntBASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 RNA5SP410-201ENST00000516285 106 ntBASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 DUX4L27-201ENST00000554796 1261 ntBASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 OR13I1P-201ENST00000609811 1264 ntBASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 AC138649.4-201ENST00000612222 287 ntBASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 LINC01230-201ENST00000625222 3017 ntBASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms