Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC12.26□□□□□ -0.45
CX3CL1P78423 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC12.26□□□□□ -0.45
CX3CL1P78423 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.26□□□□□ -0.45
CX3CL1P78423 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
CX3CL1P78423 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
CX3CL1P78423 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC12.26□□□□□ -0.45
CX3CL1P78423 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC12.26□□□□□ -0.45
CX3CL1P78423 SUN1-204ENST00000403868 978 ntTSL 2 BASIC12.26□□□□□ -0.45
CX3CL1P78423 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 AC087499.6-201ENST00000411576 835 ntBASIC12.26□□□□□ -0.45
CX3CL1P78423 AL353779.1-201ENST00000434793 351 ntBASIC12.26□□□□□ -0.45
CX3CL1P78423 HMGN1P19-201ENST00000436976 333 ntBASIC12.26□□□□□ -0.45
CX3CL1P78423 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC12.26□□□□□ -0.45
CX3CL1P78423 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC12.26□□□□□ -0.45
CX3CL1P78423 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC12.26□□□□□ -0.45
CX3CL1P78423 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC12.26□□□□□ -0.45
CX3CL1P78423 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
CX3CL1P78423 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC12.26□□□□□ -0.45
CX3CL1P78423 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC12.26□□□□□ -0.45
CX3CL1P78423 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC12.26□□□□□ -0.45
CX3CL1P78423 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 AL391825.1-201ENST00000457671 1364 ntBASIC12.26□□□□□ -0.45
CX3CL1P78423 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
CX3CL1P78423 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC12.26□□□□□ -0.45
CX3CL1P78423 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
CX3CL1P78423 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
CX3CL1P78423 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CX3CL1P78423 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
CX3CL1P78423 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.25□□□□□ -0.45
CX3CL1P78423 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC12.25□□□□□ -0.45
CX3CL1P78423 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC12.25□□□□□ -0.45
CX3CL1P78423 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
CX3CL1P78423 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
CX3CL1P78423 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC12.25□□□□□ -0.45
CX3CL1P78423 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
CX3CL1P78423 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
CX3CL1P78423 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC12.25□□□□□ -0.45
CX3CL1P78423 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC12.25□□□□□ -0.45
CX3CL1P78423 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC12.25□□□□□ -0.45
CX3CL1P78423 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 RPL13AP25-201ENST00000484130 612 ntBASIC12.25□□□□□ -0.45
CX3CL1P78423 TERF1P3-201ENST00000505638 1227 ntBASIC12.25□□□□□ -0.45
CX3CL1P78423 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC12.25□□□□□ -0.45
CX3CL1P78423 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC12.25□□□□□ -0.45
CX3CL1P78423 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
CX3CL1P78423 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.25□□□□□ -0.45
CX3CL1P78423 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC12.25□□□□□ -0.45
CX3CL1P78423 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC12.25□□□□□ -0.45
CX3CL1P78423 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC12.25□□□□□ -0.45
CX3CL1P78423 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
CX3CL1P78423 AC093726.1-201ENST00000608064 963 ntBASIC12.25□□□□□ -0.45
CX3CL1P78423 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC12.25□□□□□ -0.45
CX3CL1P78423 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
CX3CL1P78423 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
CX3CL1P78423 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
CX3CL1P78423 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
CX3CL1P78423 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC12.25□□□□□ -0.45
CX3CL1P78423 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
CX3CL1P78423 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
CX3CL1P78423 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC12.25□□□□□ -0.45
CX3CL1P78423 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CX3CL1P78423 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms