Protein–RNA interactions for Protein: P61758

VBP1, Prefoldin subunit 3, humanhuman

Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VBP1P61758 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VBP1P61758 DDT-204ENST00000404092 805 ntTSL 3 BASIC13.62□□□□□ -0.23
VBP1P61758 AC136604.1-201ENST00000418535 575 ntBASIC13.62□□□□□ -0.23
VBP1P61758 ELP6-209ENST00000446787 894 ntTSL 3 BASIC13.62□□□□□ -0.23
VBP1P61758 AC108073.2-201ENST00000464002 357 ntBASIC13.62□□□□□ -0.23
VBP1P61758 AC098859.1-201ENST00000502915 1238 ntBASIC13.62□□□□□ -0.23
VBP1P61758 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC13.62□□□□□ -0.23
VBP1P61758 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.62□□□□□ -0.23
VBP1P61758 THTPA-204ENST00000554970 569 ntTSL 4 BASIC13.62□□□□□ -0.23
VBP1P61758 THTPA-206ENST00000556015 535 ntTSL 3 BASIC13.62□□□□□ -0.23
VBP1P61758 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.62□□□□□ -0.23
VBP1P61758 RPL28-209ENST00000560055 670 ntTSL 3 BASIC13.62□□□□□ -0.23
VBP1P61758 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC13.62□□□□□ -0.23
VBP1P61758 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VBP1P61758 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VBP1P61758 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
VBP1P61758 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC13.62□□□□□ -0.23
VBP1P61758 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VBP1P61758 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
VBP1P61758 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
VBP1P61758 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VBP1P61758 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VBP1P61758 NARF-206ENST00000457415 1668 ntTSL 5 BASIC13.62□□□□□ -0.23
VBP1P61758 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
VBP1P61758 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VBP1P61758 EML1-203ENST00000334192 4064 ntTSL 5 BASIC13.62□□□□□ -0.23
VBP1P61758 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
VBP1P61758 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
VBP1P61758 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC13.62□□□□□ -0.23
VBP1P61758 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.62□□□□□ -0.23
VBP1P61758 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
VBP1P61758 CROT-203ENST00000419147 2959 ntTSL 2 BASIC13.62□□□□□ -0.23
VBP1P61758 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VBP1P61758 AC111170.3-201ENST00000624282 2464 ntBASIC13.62□□□□□ -0.23
VBP1P61758 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.61□□□□□ -0.23
VBP1P61758 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.61□□□□□ -0.23
VBP1P61758 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC13.61□□□□□ -0.23
VBP1P61758 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC13.61□□□□□ -0.23
VBP1P61758 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.61□□□□□ -0.23
VBP1P61758 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC13.61□□□□□ -0.23
VBP1P61758 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC13.61□□□□□ -0.23
VBP1P61758 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC13.61□□□□□ -0.23
VBP1P61758 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC13.61□□□□□ -0.23
VBP1P61758 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC13.61□□□□□ -0.23
VBP1P61758 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC13.61□□□□□ -0.23
VBP1P61758 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC13.61□□□□□ -0.23
VBP1P61758 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC13.61□□□□□ -0.23
VBP1P61758 LSM5-204ENST00000409909 740 ntTSL 2 BASIC13.61□□□□□ -0.23
VBP1P61758 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC13.61□□□□□ -0.23
VBP1P61758 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC13.61□□□□□ -0.23
VBP1P61758 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.23
VBP1P61758 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
VBP1P61758 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC13.61□□□□□ -0.23
VBP1P61758 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.61□□□□□ -0.23
VBP1P61758 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC13.61□□□□□ -0.23
VBP1P61758 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
VBP1P61758 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VBP1P61758 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VBP1P61758 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VBP1P61758 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC13.6□□□□□ -0.23
VBP1P61758 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
VBP1P61758 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
VBP1P61758 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VBP1P61758 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
VBP1P61758 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VBP1P61758 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
VBP1P61758 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
VBP1P61758 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VBP1P61758 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
VBP1P61758 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.6□□□□□ -0.23
VBP1P61758 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VBP1P61758 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.6□□□□□ -0.23
VBP1P61758 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VBP1P61758 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms