Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.34□□□□□ -0.11
CLK1P49759 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLK1P49759 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLK1P49759 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLK1P49759 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLK1P49759 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.34□□□□□ -0.11
CLK1P49759 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLK1P49759 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
CLK1P49759 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CLK1P49759 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLK1P49759 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLK1P49759 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLK1P49759 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLK1P49759 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLK1P49759 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CLK1P49759 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.33□□□□□ -0.11
CLK1P49759 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
CLK1P49759 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.33□□□□□ -0.11
CLK1P49759 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CLK1P49759 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.33□□□□□ -0.11
CLK1P49759 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLK1P49759 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLK1P49759 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLK1P49759 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CLK1P49759 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.33□□□□□ -0.12
CLK1P49759 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLK1P49759 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
CLK1P49759 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CLK1P49759 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
CLK1P49759 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.33□□□□□ -0.12
CLK1P49759 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLK1P49759 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CLK1P49759 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.33□□□□□ -0.12
CLK1P49759 HIST3H2BA-201ENST00000436555 524 ntBASIC14.33□□□□□ -0.12
CLK1P49759 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.33□□□□□ -0.12
CLK1P49759 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.33□□□□□ -0.12
CLK1P49759 AC027369.6-201ENST00000525520 931 ntBASIC14.33□□□□□ -0.12
CLK1P49759 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.33□□□□□ -0.12
CLK1P49759 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.33□□□□□ -0.12
CLK1P49759 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.33□□□□□ -0.12
CLK1P49759 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.33□□□□□ -0.12
CLK1P49759 AL138828.2-201ENST00000615812 383 ntBASIC14.33□□□□□ -0.12
CLK1P49759 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLK1P49759 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.33□□□□□ -0.12
CLK1P49759 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLK1P49759 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.33□□□□□ -0.12
CLK1P49759 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CLK1P49759 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.33□□□□□ -0.12
CLK1P49759 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLK1P49759 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CLK1P49759 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLK1P49759 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLK1P49759 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CLK1P49759 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLK1P49759 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLK1P49759 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CLK1P49759 AC009090.5-201ENST00000624886 2285 ntBASIC14.32□□□□□ -0.12
CLK1P49759 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.32□□□□□ -0.12
CLK1P49759 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC14.32□□□□□ -0.12
CLK1P49759 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.32□□□□□ -0.12
CLK1P49759 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CLK1P49759 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CLK1P49759 AZGP1P1-201ENST00000411909 902 ntBASIC14.32□□□□□ -0.12
CLK1P49759 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.32□□□□□ -0.12
CLK1P49759 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 ZNF890P-202ENST00000530367 1156 ntBASIC14.32□□□□□ -0.12
CLK1P49759 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CLK1P49759 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.32□□□□□ -0.12
CLK1P49759 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.32□□□□□ -0.12
CLK1P49759 TEX28P1-201ENST00000613479 1221 ntBASIC14.32□□□□□ -0.12
CLK1P49759 TEX28P2-201ENST00000617764 1221 ntBASIC14.32□□□□□ -0.12
CLK1P49759 SPDYE12P-201ENST00000618416 771 ntBASIC14.32□□□□□ -0.12
CLK1P49759 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.32□□□□□ -0.12
CLK1P49759 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.32□□□□□ -0.12
CLK1P49759 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC14.32□□□□□ -0.12
CLK1P49759 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 AC087499.5-201ENST00000452760 1342 ntBASIC14.32□□□□□ -0.12
CLK1P49759 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
CLK1P49759 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.32□□□□□ -0.12
CLK1P49759 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.32□□□□□ -0.12
CLK1P49759 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLK1P49759 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms