Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CCDC74BP1-201ENST00000508880 1123 ntBASIC12.67□□□□□ -0.38
HOXA1P49639 RNA5SP419-201ENST00000515908 135 ntBASIC12.67□□□□□ -0.38
HOXA1P49639 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC12.67□□□□□ -0.38
HOXA1P49639 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC12.67□□□□□ -0.38
HOXA1P49639 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC12.67□□□□□ -0.38
HOXA1P49639 AL135744.1-201ENST00000565098 629 ntBASIC12.67□□□□□ -0.38
HOXA1P49639 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC12.67□□□□□ -0.38
HOXA1P49639 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 AC099522.2-201ENST00000607001 744 ntBASIC12.67□□□□□ -0.38
HOXA1P49639 KRT8P37-201ENST00000451609 1420 ntBASIC12.67□□□□□ -0.38
HOXA1P49639 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
HOXA1P49639 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
HOXA1P49639 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 AKAP8P1-201ENST00000434743 1349 ntBASIC12.66□□□□□ -0.38
HOXA1P49639 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
HOXA1P49639 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC12.66□□□□□ -0.38
HOXA1P49639 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC12.66□□□□□ -0.38
HOXA1P49639 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
HOXA1P49639 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC12.66□□□□□ -0.38
HOXA1P49639 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC12.66□□□□□ -0.38
HOXA1P49639 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC12.66□□□□□ -0.38
HOXA1P49639 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC12.66□□□□□ -0.38
HOXA1P49639 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC12.66□□□□□ -0.38
HOXA1P49639 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 AL139010.1-201ENST00000454878 894 ntBASIC12.66□□□□□ -0.38
HOXA1P49639 RN7SL589P-201ENST00000481268 310 ntBASIC12.66□□□□□ -0.38
HOXA1P49639 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC12.66□□□□□ -0.38
HOXA1P49639 RNA5SP416-201ENST00000516838 111 ntBASIC12.66□□□□□ -0.38
HOXA1P49639 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 KRT126P-201ENST00000549467 1181 ntBASIC12.66□□□□□ -0.38
HOXA1P49639 AC034105.1-201ENST00000563488 319 ntBASIC12.66□□□□□ -0.38
HOXA1P49639 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC12.66□□□□□ -0.38
HOXA1P49639 SLC25A6P4-201ENST00000586535 553 ntBASIC12.66□□□□□ -0.38
HOXA1P49639 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC12.66□□□□□ -0.38
HOXA1P49639 AC026979.3-201ENST00000607315 403 ntBASIC12.66□□□□□ -0.38
HOXA1P49639 AL513190.1-201ENST00000621254 727 ntBASIC12.66□□□□□ -0.38
HOXA1P49639 AC008267.7-201ENST00000624570 1194 ntBASIC12.66□□□□□ -0.38
HOXA1P49639 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
HOXA1P49639 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
HOXA1P49639 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXA1P49639 AC011474.4-201ENST00000623523 2076 ntBASIC12.66□□□□□ -0.38
HOXA1P49639 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC12.66□□□□□ -0.38
HOXA1P49639 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC12.66□□□□□ -0.38
HOXA1P49639 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXA1P49639 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC12.65□□□□□ -0.38
HOXA1P49639 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
HOXA1P49639 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
HOXA1P49639 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
HOXA1P49639 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC12.65□□□□□ -0.38
HOXA1P49639 EML1-203ENST00000334192 4064 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXA1P49639 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms