Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC12.48□□□□□ -0.41
CDX1P47902 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC12.47□□□□□ -0.41
CDX1P47902 IMPDH1P4-201ENST00000445028 1534 ntBASIC12.47□□□□□ -0.41
CDX1P47902 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC12.47□□□□□ -0.41
CDX1P47902 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC12.47□□□□□ -0.41
CDX1P47902 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
CDX1P47902 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
CDX1P47902 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
CDX1P47902 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC12.47□□□□□ -0.41
CDX1P47902 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
CDX1P47902 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 CALY-203ENST00000368558 825 ntTSL 5 BASIC12.47□□□□□ -0.41
CDX1P47902 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
CDX1P47902 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC12.47□□□□□ -0.41
CDX1P47902 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC12.47□□□□□ -0.41
CDX1P47902 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC12.47□□□□□ -0.41
CDX1P47902 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC12.47□□□□□ -0.41
CDX1P47902 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC12.47□□□□□ -0.41
CDX1P47902 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 REEP4-207ENST00000523293 913 ntTSL 3 BASIC12.47□□□□□ -0.41
CDX1P47902 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC12.47□□□□□ -0.41
CDX1P47902 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC12.47□□□□□ -0.41
CDX1P47902 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC12.47□□□□□ -0.41
CDX1P47902 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC12.47□□□□□ -0.41
CDX1P47902 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC12.47□□□□□ -0.41
CDX1P47902 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC12.47□□□□□ -0.41
CDX1P47902 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC12.47□□□□□ -0.41
CDX1P47902 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
CDX1P47902 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
CDX1P47902 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC12.47□□□□□ -0.41
CDX1P47902 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDX1P47902 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC12.47□□□□□ -0.41
CDX1P47902 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
CDX1P47902 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
CDX1P47902 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC12.47□□□□□ -0.41
CDX1P47902 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
CDX1P47902 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
CDX1P47902 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
CDX1P47902 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC12.46□□□□□ -0.41
CDX1P47902 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC12.46□□□□□ -0.41
CDX1P47902 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC12.46□□□□□ -0.41
CDX1P47902 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
CDX1P47902 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
CDX1P47902 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 AL691432.1-201ENST00000596308 1422 ntBASIC12.46□□□□□ -0.41
CDX1P47902 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC12.46□□□□□ -0.41
CDX1P47902 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC12.46□□□□□ -0.41
CDX1P47902 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 AC089987.1-201ENST00000551654 2209 ntBASIC12.46□□□□□ -0.41
CDX1P47902 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
CDX1P47902 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
CDX1P47902 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
CDX1P47902 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC12.46□□□□□ -0.41
CDX1P47902 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC12.46□□□□□ -0.41
CDX1P47902 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CDX1P47902 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms