Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 TMEM14DP-201ENST00000422205 345 ntBASIC14.31□□□□□ -0.12
SOX3P41225 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX3P41225 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX3P41225 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.31□□□□□ -0.12
SOX3P41225 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX3P41225 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.31□□□□□ -0.12
SOX3P41225 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.31□□□□□ -0.12
SOX3P41225 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.31□□□□□ -0.12
SOX3P41225 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.31□□□□□ -0.12
SOX3P41225 AC107373.2-201ENST00000607735 490 ntBASIC14.31□□□□□ -0.12
SOX3P41225 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.31□□□□□ -0.12
SOX3P41225 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.31□□□□□ -0.12
SOX3P41225 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
SOX3P41225 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
SOX3P41225 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX3P41225 DRD5P1-201ENST00000456605 1438 ntBASIC14.31□□□□□ -0.12
SOX3P41225 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SOX3P41225 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
SOX3P41225 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.3□□□□□ -0.12
SOX3P41225 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
SOX3P41225 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SOX3P41225 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.3□□□□□ -0.12
SOX3P41225 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 AJ011931.1-201ENST00000618749 2492 ntBASIC14.3□□□□□ -0.12
SOX3P41225 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
SOX3P41225 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.3□□□□□ -0.12
SOX3P41225 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.3□□□□□ -0.12
SOX3P41225 U91328.1-201ENST00000437528 223 ntBASIC14.3□□□□□ -0.12
SOX3P41225 AC026410.3-201ENST00000514280 936 ntBASIC14.3□□□□□ -0.12
SOX3P41225 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.3□□□□□ -0.12
SOX3P41225 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.3□□□□□ -0.12
SOX3P41225 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.3□□□□□ -0.12
SOX3P41225 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.3□□□□□ -0.12
SOX3P41225 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.3□□□□□ -0.12
SOX3P41225 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
SOX3P41225 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.3□□□□□ -0.12
SOX3P41225 RPSAP52-203ENST00000622976 1023 ntBASIC14.3□□□□□ -0.12
SOX3P41225 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SOX3P41225 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.3□□□□□ -0.12
SOX3P41225 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.3□□□□□ -0.12
SOX3P41225 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
SOX3P41225 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SOX3P41225 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX3P41225 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
SOX3P41225 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.29□□□□□ -0.12
SOX3P41225 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.29□□□□□ -0.12
SOX3P41225 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
SOX3P41225 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.29□□□□□ -0.12
SOX3P41225 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.29□□□□□ -0.12
SOX3P41225 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SOX3P41225 AC126365.1-201ENST00000578585 1514 ntBASIC14.29□□□□□ -0.12
SOX3P41225 MROH4P-201ENST00000431302 1578 ntBASIC14.29□□□□□ -0.12
SOX3P41225 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms