Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
HLA-DOAP06340 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
HLA-DOAP06340 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
HLA-DOAP06340 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.71■□□□□ 0.42
HLA-DOAP06340 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.71■□□□□ 0.42
HLA-DOAP06340 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 AC003102.2-201ENST00000589195 1469 ntBASIC17.7■□□□□ 0.42
HLA-DOAP06340 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 DUX4L46-201ENST00000566845 751 ntBASIC17.7■□□□□ 0.42
HLA-DOAP06340 BNIP3P13-201ENST00000599968 566 ntBASIC17.7■□□□□ 0.42
HLA-DOAP06340 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 PPA1-206ENST00000625364 644 ntTSL 5 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.7■□□□□ 0.42
HLA-DOAP06340 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DOAP06340 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 AC023090.2-201ENST00000625182 2110 ntBASIC17.69■□□□□ 0.42
HLA-DOAP06340 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 SALL4P5-201ENST00000419001 1760 ntBASIC17.69■□□□□ 0.42
HLA-DOAP06340 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 RBM38-204ENST00000371219 760 ntTSL 2 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 AK6-201ENST00000380818 1183 ntTSL 2 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 DEF8-202ENST00000418391 852 ntTSL 2 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 AL008707.1-201ENST00000422498 534 ntBASIC17.69■□□□□ 0.42
HLA-DOAP06340 FAM58BP-201ENST00000439056 645 ntBASIC17.69■□□□□ 0.42
HLA-DOAP06340 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 EID1-202ENST00000560490 584 ntTSL 3 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 RN7SL163P-201ENST00000583100 276 ntBASIC17.69■□□□□ 0.42
HLA-DOAP06340 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 AC008825.2-201ENST00000603374 718 ntBASIC17.69■□□□□ 0.42
HLA-DOAP06340 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 E2F3P2-201ENST00000447755 1422 ntBASIC17.69■□□□□ 0.42
HLA-DOAP06340 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 PKD1P5-201ENST00000532415 10291 ntBASIC17.69■□□□□ 0.42
HLA-DOAP06340 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HLA-DOAP06340 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DOAP06340 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
HLA-DOAP06340 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms