Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
TNFP01375 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
TNFP01375 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.7□□□□□ -0.06
TNFP01375 AL358472.3-201ENST00000608147 415 ntBASIC14.7□□□□□ -0.06
TNFP01375 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC14.7□□□□□ -0.06
TNFP01375 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
TNFP01375 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.7□□□□□ -0.06
TNFP01375 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.7□□□□□ -0.06
TNFP01375 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 AC018735.1-201ENST00000437208 1502 ntBASIC14.7□□□□□ -0.06
TNFP01375 AC011840.2-201ENST00000563063 1520 ntBASIC14.7□□□□□ -0.06
TNFP01375 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.7□□□□□ -0.06
TNFP01375 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.7□□□□□ -0.06
TNFP01375 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
TNFP01375 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.7□□□□□ -0.06
TNFP01375 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TNFP01375 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 AC138028.6-201ENST00000616106 1482 ntBASIC14.69□□□□□ -0.06
TNFP01375 INE2-201ENST00000630399 1874 ntBASIC14.69□□□□□ -0.06
TNFP01375 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
TNFP01375 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.69□□□□□ -0.06
TNFP01375 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.69□□□□□ -0.06
TNFP01375 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 AL138725.1-201ENST00000407347 1314 ntBASIC14.69□□□□□ -0.06
TNFP01375 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.69□□□□□ -0.06
TNFP01375 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC14.69□□□□□ -0.06
TNFP01375 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.69□□□□□ -0.06
TNFP01375 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
TNFP01375 AC008741.2-201ENST00000612792 3115 ntBASIC14.69□□□□□ -0.06
TNFP01375 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.69□□□□□ -0.06
TNFP01375 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.69□□□□□ -0.06
TNFP01375 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
TNFP01375 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
TNFP01375 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
TNFP01375 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.69□□□□□ -0.06
TNFP01375 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
TNFP01375 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 CALR4P-201ENST00000431943 946 ntBASIC14.69□□□□□ -0.06
TNFP01375 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC14.69□□□□□ -0.06
TNFP01375 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.69□□□□□ -0.06
TNFP01375 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.69□□□□□ -0.06
TNFP01375 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 SCARNA20.5-201ENST00000516991 142 ntBASIC14.69□□□□□ -0.06
TNFP01375 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.69□□□□□ -0.06
TNFP01375 KC6-205ENST00000599934 556 ntTSL 4 BASIC14.69□□□□□ -0.06
TNFP01375 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.69□□□□□ -0.06
TNFP01375 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.69□□□□□ -0.06
TNFP01375 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
TNFP01375 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
TNFP01375 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.69□□□□□ -0.06
TNFP01375 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC14.69□□□□□ -0.06
TNFP01375 AC020910.5-201ENST00000623668 1865 ntBASIC14.69□□□□□ -0.06
TNFP01375 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
TNFP01375 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
TNFP01375 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.69□□□□□ -0.06
TNFP01375 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.69□□□□□ -0.06
TNFP01375 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TNFP01375 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
TNFP01375 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
TNFP01375 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TNFP01375 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.68□□□□□ -0.06
TNFP01375 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TNFP01375 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TNFP01375 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TNFP01375 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.68□□□□□ -0.06
TNFP01375 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TNFP01375 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.68□□□□□ -0.06
TNFP01375 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.68□□□□□ -0.06
TNFP01375 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TNFP01375 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
TNFP01375 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TNFP01375 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TNFP01375 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms