Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LDB3O75112 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
LDB3O75112 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.25□□□□□ -0.13
LDB3O75112 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
LDB3O75112 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 AC063926.2-201ENST00000623766 1308 ntBASIC14.25□□□□□ -0.13
LDB3O75112 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.25□□□□□ -0.13
LDB3O75112 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
LDB3O75112 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
LDB3O75112 AC005229.1-201ENST00000392885 409 ntBASIC14.25□□□□□ -0.13
LDB3O75112 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.25□□□□□ -0.13
LDB3O75112 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.25□□□□□ -0.13
LDB3O75112 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.25□□□□□ -0.13
LDB3O75112 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.25□□□□□ -0.13
LDB3O75112 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.25□□□□□ -0.13
LDB3O75112 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.25□□□□□ -0.13
LDB3O75112 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.25□□□□□ -0.13
LDB3O75112 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.25□□□□□ -0.13
LDB3O75112 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
LDB3O75112 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
LDB3O75112 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC14.25□□□□□ -0.13
LDB3O75112 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
LDB3O75112 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LDB3O75112 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.24□□□□□ -0.13
LDB3O75112 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.24□□□□□ -0.13
LDB3O75112 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
LDB3O75112 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
LDB3O75112 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.24□□□□□ -0.13
LDB3O75112 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.24□□□□□ -0.13
LDB3O75112 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
LDB3O75112 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.24□□□□□ -0.13
LDB3O75112 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.24□□□□□ -0.13
LDB3O75112 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.24□□□□□ -0.13
LDB3O75112 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.24□□□□□ -0.13
LDB3O75112 DUX4L47-201ENST00000566374 394 ntBASIC14.24□□□□□ -0.13
LDB3O75112 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.24□□□□□ -0.13
LDB3O75112 AL022328.1-201ENST00000610050 478 ntBASIC14.24□□□□□ -0.13
LDB3O75112 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.24□□□□□ -0.13
LDB3O75112 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.24□□□□□ -0.13
LDB3O75112 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.24□□□□□ -0.13
LDB3O75112 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
LDB3O75112 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
LDB3O75112 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.24□□□□□ -0.13
LDB3O75112 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
LDB3O75112 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LDB3O75112 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.24□□□□□ -0.13
LDB3O75112 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms