Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
HMGB3O15347 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
HMGB3O15347 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
HMGB3O15347 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC12.25□□□□□ -0.45
HMGB3O15347 KIAA0319-205ENST00000543707 5314 ntAPPRIS P3 TSL 5 BASIC12.25□□□□□ -0.45
HMGB3O15347 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC12.25□□□□□ -0.45
HMGB3O15347 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
HMGB3O15347 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC12.25□□□□□ -0.45
HMGB3O15347 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
HMGB3O15347 APP-205ENST00000358918 2366 ntTSL 5 BASIC12.25□□□□□ -0.45
HMGB3O15347 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 DFFB-203ENST00000341385 572 ntTSL 5 BASIC12.25□□□□□ -0.45
HMGB3O15347 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
HMGB3O15347 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC12.25□□□□□ -0.45
HMGB3O15347 MOK-208ENST00000519058 917 ntTSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC12.25□□□□□ -0.45
HMGB3O15347 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC12.25□□□□□ -0.45
HMGB3O15347 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC12.25□□□□□ -0.45
HMGB3O15347 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
HMGB3O15347 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 CD7-202ENST00000578509 925 ntTSL 3 BASIC12.25□□□□□ -0.45
HMGB3O15347 CLEC4GP1-201ENST00000596555 870 ntBASIC12.25□□□□□ -0.45
HMGB3O15347 AC093458.2-201ENST00000623150 629 ntBASIC12.25□□□□□ -0.45
HMGB3O15347 AC005593.1-201ENST00000624894 515 ntBASIC12.25□□□□□ -0.45
HMGB3O15347 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC12.25□□□□□ -0.45
HMGB3O15347 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
HMGB3O15347 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 STK24-208ENST00000539966 9361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 NBPF12-208ENST00000617931 7061 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
HMGB3O15347 ZC3HAV1-201ENST00000242351 7100 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 AP002414.3-201ENST00000589352 1468 ntBASIC12.25□□□□□ -0.45
HMGB3O15347 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 SMIM10L1-201ENST00000622602 4795 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
HMGB3O15347 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
HMGB3O15347 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC12.25□□□□□ -0.45
HMGB3O15347 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HMGB3O15347 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC12.25□□□□□ -0.45
HMGB3O15347 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
HMGB3O15347 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
HMGB3O15347 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC12.24□□□□□ -0.45
HMGB3O15347 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms