Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 RN7SL67P-201ENST00000492147 296 ntBASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 AL136301.1-201ENST00000615830 422 ntBASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
SHROOM4Q9ULL8 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 RPS9P1-201ENST00000419943 583 ntBASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 RPL18AP3-201ENST00000462885 528 ntBASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 NDUFS6P1-201ENST00000485187 316 ntBASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 AC005632.3-201ENST00000605544 308 ntBASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC28.37■■■□□ 2.13
SHROOM4Q9ULL8 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 FOS-204ENST00000554617 796 ntTSL 2 BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 OR6D1P-203ENST00000641209 4860 ntBASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 AC087481.3-201ENST00000602886 1894 ntBASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM4Q9ULL8 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 AC104073.2-201ENST00000453737 312 ntBASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 TMCO5B-205ENST00000530020 894 ntBASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SHROOM4Q9ULL8 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms