Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 GATB-205ENST00000508611 605 ntTSL 2 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 CITED2-204ENST00000618718 901 ntTSL 2 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 AL590627.1-203ENST00000421194 1026 ntBASIC13.88□□□□□ -0.19
CLN6Q9NWW5 TARDBPP1-201ENST00000442013 1203 ntBASIC13.88□□□□□ -0.19
CLN6Q9NWW5 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 RARRES2P9-201ENST00000565168 469 ntBASIC13.88□□□□□ -0.19
CLN6Q9NWW5 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 PIN1-206ENST00000587625 878 ntTSL 2 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 UXT-AS1-201ENST00000590504 1525 ntBASIC13.88□□□□□ -0.19
CLN6Q9NWW5 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLN6Q9NWW5 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms