Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 RN7SKP230-201ENST00000365642 335 ntBASIC16.17■□□□□ 0.18
SIX2Q9NPC8 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 AL138725.1-201ENST00000407347 1314 ntBASIC16.17■□□□□ 0.18
SIX2Q9NPC8 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SIX2Q9NPC8 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 OS9-204ENST00000389146 2091 ntTSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 FO681548.1-201ENST00000455617 1132 ntBASIC16.16■□□□□ 0.18
SIX2Q9NPC8 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 AL033527.5-201ENST00000641382 801 ntBASIC16.16■□□□□ 0.18
SIX2Q9NPC8 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SIX2Q9NPC8 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 SALL4P5-201ENST00000419001 1760 ntBASIC16.15■□□□□ 0.18
SIX2Q9NPC8 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 AC117489.1-201ENST00000625169 3217 ntBASIC16.15■□□□□ 0.18
SIX2Q9NPC8 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SIX2Q9NPC8 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms