Protein–RNA interactions for Protein: Q9GZT3

SLIRP, SRA stem-loop-interacting RNA-binding protein, mitochondrial, humanhuman

Known RBP Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRPQ9GZT3 CICP1-201ENST00000416803 2410 ntBASIC13.32□□□□□ -0.28
SLIRPQ9GZT3 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.32□□□□□ -0.28
SLIRPQ9GZT3 VENTXP1-201ENST00000569334 2716 ntBASIC13.32□□□□□ -0.28
SLIRPQ9GZT3 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SLIRPQ9GZT3 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SLIRPQ9GZT3 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SLIRPQ9GZT3 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SLIRPQ9GZT3 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 FALEC-201ENST00000416894 566 ntTSL 3 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 AC140658.5-201ENST00000438532 169 ntBASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SLIRPQ9GZT3 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AL138918.1-201ENST00000568306 659 ntBASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AC015910.1-201ENST00000579400 975 ntBASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 AL356488.2-201ENST00000602755 427 ntBASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SLIRPQ9GZT3 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms