Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 C1R-201ENST00000535233 2211 ntTSL 2 BASIC13.31□□□□□ -0.28
NKX3-1Q99801 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX3-1Q99801 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 RPS19-201ENST00000221975 500 ntTSL 3 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 SPDYE17-201ENST00000412399 783 ntBASIC13.3□□□□□ -0.28
NKX3-1Q99801 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 AC025678.2-201ENST00000562061 970 ntBASIC13.3□□□□□ -0.28
NKX3-1Q99801 UBL5-208ENST00000593087 320 ntTSL 3 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 LINC01115-203ENST00000606068 577 ntBASIC13.3□□□□□ -0.28
NKX3-1Q99801 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 LINC00628-201ENST00000628516 1289 ntBASIC13.3□□□□□ -0.28
NKX3-1Q99801 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.3□□□□□ -0.28
NKX3-1Q99801 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX3-1Q99801 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 AC113367.3-201ENST00000508316 1912 ntBASIC13.29□□□□□ -0.28
NKX3-1Q99801 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 AC107918.4-201ENST00000641966 3141 ntBASIC13.29□□□□□ -0.28
NKX3-1Q99801 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 GHSR-202ENST00000427970 912 ntBASIC13.29□□□□□ -0.28
NKX3-1Q99801 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 AL079307.3-201ENST00000556114 283 ntBASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms