Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
IFT140Q96RY7 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC24.17■■□□□ 1.46
IFT140Q96RY7 SNORD3B-1-201ENST00000577988 758 ntBASIC24.17■■□□□ 1.46
IFT140Q96RY7 AC090386.2-201ENST00000623010 1039 ntBASIC24.17■■□□□ 1.46
IFT140Q96RY7 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
IFT140Q96RY7 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
IFT140Q96RY7 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
IFT140Q96RY7 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC24.17■■□□□ 1.46
IFT140Q96RY7 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC24.17■■□□□ 1.46
IFT140Q96RY7 PCDHA12-202ENST00000613593 2588 ntBASIC24.17■■□□□ 1.46
IFT140Q96RY7 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
IFT140Q96RY7 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC24.16■■□□□ 1.46
IFT140Q96RY7 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC24.16■■□□□ 1.46
IFT140Q96RY7 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
IFT140Q96RY7 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
IFT140Q96RY7 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC24.16■■□□□ 1.46
IFT140Q96RY7 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
IFT140Q96RY7 AC092896.1-201ENST00000465850 380 ntBASIC24.16■■□□□ 1.46
IFT140Q96RY7 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC24.16■■□□□ 1.46
IFT140Q96RY7 BCL2L12P1-201ENST00000508390 733 ntBASIC24.16■■□□□ 1.46
IFT140Q96RY7 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC24.16■■□□□ 1.46
IFT140Q96RY7 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
IFT140Q96RY7 FBXO36P1-201ENST00000579006 471 ntBASIC24.16■■□□□ 1.46
IFT140Q96RY7 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC24.16■■□□□ 1.46
IFT140Q96RY7 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC24.16■■□□□ 1.46
IFT140Q96RY7 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC24.16■■□□□ 1.46
IFT140Q96RY7 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
IFT140Q96RY7 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
IFT140Q96RY7 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
IFT140Q96RY7 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
IFT140Q96RY7 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
IFT140Q96RY7 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
IFT140Q96RY7 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC24.15■■□□□ 1.46
IFT140Q96RY7 AL591122.2-201ENST00000624125 1853 ntBASIC24.15■■□□□ 1.46
IFT140Q96RY7 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC24.15■■□□□ 1.46
IFT140Q96RY7 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
IFT140Q96RY7 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
IFT140Q96RY7 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC24.15■■□□□ 1.46
IFT140Q96RY7 AL591471.1-201ENST00000621855 229 ntBASIC24.15■■□□□ 1.46
IFT140Q96RY7 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
IFT140Q96RY7 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC24.15■■□□□ 1.46
IFT140Q96RY7 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC24.15■■□□□ 1.46
IFT140Q96RY7 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
IFT140Q96RY7 EML3-212ENST00000494176 2901 ntTSL 2 BASIC24.15■■□□□ 1.46
IFT140Q96RY7 EML3-216ENST00000529309 2909 ntTSL 2 BASIC24.15■■□□□ 1.46
IFT140Q96RY7 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
IFT140Q96RY7 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
IFT140Q96RY7 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
IFT140Q96RY7 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
IFT140Q96RY7 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
IFT140Q96RY7 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
IFT140Q96RY7 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.46
IFT140Q96RY7 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC24.14■■□□□ 1.46
IFT140Q96RY7 CA12-203ENST00000422263 2556 ntTSL 2 BASIC24.14■■□□□ 1.46
IFT140Q96RY7 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
IFT140Q96RY7 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
IFT140Q96RY7 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
IFT140Q96RY7 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
IFT140Q96RY7 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC24.14■■□□□ 1.46
IFT140Q96RY7 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC24.14■■□□□ 1.46
IFT140Q96RY7 AC113347.2-201ENST00000512350 279 ntBASIC24.14■■□□□ 1.46
IFT140Q96RY7 AC092612.1-201ENST00000514501 998 ntBASIC24.14■■□□□ 1.46
IFT140Q96RY7 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC24.14■■□□□ 1.46
IFT140Q96RY7 CTBP2P6-201ENST00000526402 1229 ntBASIC24.14■■□□□ 1.46
IFT140Q96RY7 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
IFT140Q96RY7 AC020904.3-201ENST00000624199 442 ntBASIC24.14■■□□□ 1.46
IFT140Q96RY7 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC24.14■■□□□ 1.46
IFT140Q96RY7 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.46
IFT140Q96RY7 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
IFT140Q96RY7 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
IFT140Q96RY7 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
IFT140Q96RY7 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
IFT140Q96RY7 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC24.14■■□□□ 1.45
IFT140Q96RY7 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
IFT140Q96RY7 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
IFT140Q96RY7 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC24.14■■□□□ 1.45
IFT140Q96RY7 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
IFT140Q96RY7 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
IFT140Q96RY7 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
IFT140Q96RY7 AC106820.2-201ENST00000563775 3264 ntBASIC24.14■■□□□ 1.45
IFT140Q96RY7 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
IFT140Q96RY7 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
IFT140Q96RY7 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
IFT140Q96RY7 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
IFT140Q96RY7 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
IFT140Q96RY7 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
IFT140Q96RY7 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
IFT140Q96RY7 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
IFT140Q96RY7 SEPHS2P1-201ENST00000511618 1162 ntBASIC24.13■■□□□ 1.45
IFT140Q96RY7 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 MED11-202ENST00000573708 802 ntTSL 2 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
IFT140Q96RY7 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
IFT140Q96RY7 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
IFT140Q96RY7 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms