Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 NDUFS6P1-201ENST00000485187 316 ntBASIC16.3■□□□□ 0.2
LRCH3Q96II8 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 POLD4-208ENST00000532830 904 ntTSL 3 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 NAT9-220ENST00000582870 896 ntTSL 5 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LRCH3Q96II8 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.29■□□□□ 0.2
LRCH3Q96II8 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LRCH3Q96II8 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LRCH3Q96II8 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.29■□□□□ 0.2
LRCH3Q96II8 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.29■□□□□ 0.2
LRCH3Q96II8 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
LRCH3Q96II8 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LRCH3Q96II8 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LRCH3Q96II8 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
LRCH3Q96II8 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC16.29■□□□□ 0.2
LRCH3Q96II8 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LRCH3Q96II8 CHCHD2P9-201ENST00000461726 456 ntBASIC16.29■□□□□ 0.2
LRCH3Q96II8 HLA-J-204ENST00000495278 958 ntBASIC16.29■□□□□ 0.2
LRCH3Q96II8 MIR5001-201ENST00000580185 100 ntBASIC16.29■□□□□ 0.2
LRCH3Q96II8 MIR3180-2-201ENST00000581748 88 ntBASIC16.29■□□□□ 0.2
LRCH3Q96II8 MIR4472-1-201ENST00000584349 80 ntBASIC16.29■□□□□ 0.2
LRCH3Q96II8 MEG3_2.1-201ENST00000611456 105 ntBASIC16.29■□□□□ 0.2
LRCH3Q96II8 AC138466.5-201ENST00000624002 808 ntBASIC16.29■□□□□ 0.2
LRCH3Q96II8 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.29■□□□□ 0.2
LRCH3Q96II8 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LRCH3Q96II8 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LRCH3Q96II8 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LRCH3Q96II8 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
LRCH3Q96II8 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LRCH3Q96II8 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LRCH3Q96II8 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LRCH3Q96II8 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 SEC63P1-201ENST00000425785 1258 ntBASIC16.28■□□□□ 0.2
LRCH3Q96II8 VDAC1P1-201ENST00000439229 848 ntBASIC16.28■□□□□ 0.2
LRCH3Q96II8 AC093909.3-201ENST00000504783 336 ntBASIC16.28■□□□□ 0.2
LRCH3Q96II8 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 RN7SL371P-201ENST00000578099 267 ntBASIC16.28■□□□□ 0.2
LRCH3Q96II8 AC008805.1-201ENST00000590892 364 ntBASIC16.28■□□□□ 0.2
LRCH3Q96II8 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 PEBP1P2-201ENST00000603980 558 ntBASIC16.28■□□□□ 0.2
LRCH3Q96II8 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.28■□□□□ 0.2
LRCH3Q96II8 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LRCH3Q96II8 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 AC022188.1-201ENST00000620960 1664 ntBASIC16.27■□□□□ 0.2
LRCH3Q96II8 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LRCH3Q96II8 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LRCH3Q96II8 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LRCH3Q96II8 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LRCH3Q96II8 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LRCH3Q96II8 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LRCH3Q96II8 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LRCH3Q96II8 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms