Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 HNRNPA1P5-201ENST00000558213 966 ntBASIC19.26■□□□□ 0.67
RXRBP28702 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC19.26■□□□□ 0.67
RXRBP28702 OR3A1-202ENST00000615105 966 ntBASIC19.26■□□□□ 0.67
RXRBP28702 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC19.26■□□□□ 0.67
RXRBP28702 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RXRBP28702 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
RXRBP28702 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RXRBP28702 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
RXRBP28702 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.26■□□□□ 0.67
RXRBP28702 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.26■□□□□ 0.67
RXRBP28702 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RXRBP28702 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.26■□□□□ 0.67
RXRBP28702 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
RXRBP28702 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
RXRBP28702 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC19.25■□□□□ 0.67
RXRBP28702 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC19.25■□□□□ 0.67
RXRBP28702 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.25■□□□□ 0.67
RXRBP28702 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC19.25■□□□□ 0.67
RXRBP28702 NQO2-204ENST00000380454 851 ntTSL 2 BASIC19.25■□□□□ 0.67
RXRBP28702 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
RXRBP28702 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC19.25■□□□□ 0.67
RXRBP28702 GALP-202ENST00000440823 889 ntTSL 5 BASIC19.25■□□□□ 0.67
RXRBP28702 STK24P1-201ENST00000455035 1291 ntBASIC19.25■□□□□ 0.67
RXRBP28702 ALG1L15P-201ENST00000482834 794 ntBASIC19.25■□□□□ 0.67
RXRBP28702 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC19.25■□□□□ 0.67
RXRBP28702 RN7SL767P-201ENST00000493013 295 ntBASIC19.25■□□□□ 0.67
RXRBP28702 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC19.25■□□□□ 0.67
RXRBP28702 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC19.25■□□□□ 0.67
RXRBP28702 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC19.25■□□□□ 0.67
RXRBP28702 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC19.25■□□□□ 0.67
RXRBP28702 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC19.25■□□□□ 0.67
RXRBP28702 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC19.25■□□□□ 0.67
RXRBP28702 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC19.25■□□□□ 0.67
RXRBP28702 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC19.25■□□□□ 0.67
RXRBP28702 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC19.25■□□□□ 0.67
RXRBP28702 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RXRBP28702 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RXRBP28702 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RXRBP28702 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RXRBP28702 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.24■□□□□ 0.67
RXRBP28702 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RXRBP28702 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RXRBP28702 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC19.24■□□□□ 0.67
RXRBP28702 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RXRBP28702 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RXRBP28702 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC19.24■□□□□ 0.67
RXRBP28702 TLE1P1-201ENST00000422965 589 ntBASIC19.24■□□□□ 0.67
RXRBP28702 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC19.24■□□□□ 0.67
RXRBP28702 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RXRBP28702 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
RXRBP28702 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC19.24■□□□□ 0.67
RXRBP28702 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC19.24■□□□□ 0.67
RXRBP28702 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC19.24■□□□□ 0.67
RXRBP28702 VENTXP3-201ENST00000546480 773 ntBASIC19.24■□□□□ 0.67
RXRBP28702 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC19.24■□□□□ 0.67
RXRBP28702 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC19.24■□□□□ 0.67
RXRBP28702 NAT9-219ENST00000582524 573 ntTSL 4 BASIC19.24■□□□□ 0.67
RXRBP28702 GGNBP1-204ENST00000613113 887 ntBASIC19.24■□□□□ 0.67
RXRBP28702 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC19.24■□□□□ 0.67
RXRBP28702 RARS-210ENST00000626454 177 ntTSL 5 BASIC19.24■□□□□ 0.67
RXRBP28702 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RXRBP28702 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
RXRBP28702 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
RXRBP28702 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RXRBP28702 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RXRBP28702 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RXRBP28702 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
RXRBP28702 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
RXRBP28702 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
RXRBP28702 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
RXRBP28702 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.23■□□□□ 0.67
RXRBP28702 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RXRBP28702 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
RXRBP28702 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.23■□□□□ 0.67
RXRBP28702 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
RXRBP28702 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
RXRBP28702 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RXRBP28702 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
RXRBP28702 TKT-202ENST00000423516 2075 ntTSL 2 BASIC19.23■□□□□ 0.67
RXRBP28702 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RXRBP28702 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RXRBP28702 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RXRBP28702 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms