Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 TSPY26P-202ENST00000565928 3884 ntBASIC13.92□□□□□ -0.18
MSX1P28360 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.92□□□□□ -0.18
MSX1P28360 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.92□□□□□ -0.18
MSX1P28360 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 MIR1908-201ENST00000410394 80 ntBASIC13.92□□□□□ -0.18
MSX1P28360 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.92□□□□□ -0.18
MSX1P28360 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
MSX1P28360 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 AC022137.2-201ENST00000503482 481 ntBASIC13.92□□□□□ -0.18
MSX1P28360 AC091917.2-201ENST00000505002 744 ntBASIC13.92□□□□□ -0.18
MSX1P28360 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.92□□□□□ -0.18
MSX1P28360 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
MSX1P28360 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC13.92□□□□□ -0.18
MSX1P28360 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.92□□□□□ -0.18
MSX1P28360 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.92□□□□□ -0.18
MSX1P28360 ATF5-205ENST00000600336 682 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX1P28360 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.92□□□□□ -0.18
MSX1P28360 SNX12-206ENST00000622259 661 ntTSL 5 BASIC13.92□□□□□ -0.18
MSX1P28360 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
MSX1P28360 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX1P28360 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.92□□□□□ -0.18
MSX1P28360 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.92□□□□□ -0.18
MSX1P28360 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.92□□□□□ -0.18
MSX1P28360 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
MSX1P28360 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.91□□□□□ -0.18
MSX1P28360 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
MSX1P28360 KRT8P14-201ENST00000414254 1442 ntBASIC13.91□□□□□ -0.18
MSX1P28360 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.91□□□□□ -0.18
MSX1P28360 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX1P28360 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
MSX1P28360 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 AC005229.1-201ENST00000392885 409 ntBASIC13.91□□□□□ -0.18
MSX1P28360 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
MSX1P28360 NME6-203ENST00000415644 849 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX1P28360 AC099336.1-201ENST00000417053 1171 ntBASIC13.91□□□□□ -0.18
MSX1P28360 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
MSX1P28360 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX1P28360 FO681548.1-201ENST00000455617 1132 ntBASIC13.91□□□□□ -0.18
MSX1P28360 AC093433.1-201ENST00000458048 571 ntBASIC13.91□□□□□ -0.18
MSX1P28360 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.91□□□□□ -0.18
MSX1P28360 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 RNA5SP412-201ENST00000516234 123 ntBASIC13.91□□□□□ -0.18
MSX1P28360 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX1P28360 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.91□□□□□ -0.18
MSX1P28360 MIR6787-201ENST00000616675 61 ntBASIC13.91□□□□□ -0.18
MSX1P28360 MIR6869-201ENST00000619434 62 ntBASIC13.91□□□□□ -0.18
MSX1P28360 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX1P28360 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX1P28360 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
MSX1P28360 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
MSX1P28360 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
MSX1P28360 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
MSX1P28360 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX1P28360 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX1P28360 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms