Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC13.23□□□□□ -0.29
COL8A1P27658 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC13.23□□□□□ -0.29
COL8A1P27658 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC13.23□□□□□ -0.29
COL8A1P27658 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
COL8A1P27658 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
COL8A1P27658 NAP1L6-202ENST00000641404 1222 ntBASIC13.23□□□□□ -0.29
COL8A1P27658 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 PCDHA1-201ENST00000378133 2726 ntBASIC13.23□□□□□ -0.29
COL8A1P27658 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC13.23□□□□□ -0.29
COL8A1P27658 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC13.22□□□□□ -0.29
COL8A1P27658 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
COL8A1P27658 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
COL8A1P27658 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC13.22□□□□□ -0.29
COL8A1P27658 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC13.22□□□□□ -0.29
COL8A1P27658 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
COL8A1P27658 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.22□□□□□ -0.29
COL8A1P27658 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC13.22□□□□□ -0.29
COL8A1P27658 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.22□□□□□ -0.29
COL8A1P27658 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
COL8A1P27658 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 RPL8P2-201ENST00000430538 502 ntBASIC13.22□□□□□ -0.29
COL8A1P27658 PUDPP3-201ENST00000445368 636 ntBASIC13.22□□□□□ -0.29
COL8A1P27658 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.22□□□□□ -0.29
COL8A1P27658 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 TUBB8P8-201ENST00000458717 1058 ntBASIC13.22□□□□□ -0.29
COL8A1P27658 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 AC106820.3-201ENST00000561653 397 ntBASIC13.22□□□□□ -0.29
COL8A1P27658 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC13.22□□□□□ -0.29
COL8A1P27658 AC138894.2-201ENST00000602838 371 ntBASIC13.22□□□□□ -0.29
COL8A1P27658 AC007881.3-201ENST00000608897 607 ntBASIC13.22□□□□□ -0.29
COL8A1P27658 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC13.22□□□□□ -0.29
COL8A1P27658 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 AL136295.7-201ENST00000619226 1200 ntBASIC13.22□□□□□ -0.29
COL8A1P27658 AL132780.4-201ENST00000624870 1135 ntBASIC13.22□□□□□ -0.29
COL8A1P27658 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC13.22□□□□□ -0.29
COL8A1P27658 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC13.22□□□□□ -0.29
COL8A1P27658 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 AC005052.1-201ENST00000625181 2492 ntBASIC13.22□□□□□ -0.29
COL8A1P27658 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
COL8A1P27658 AGK-211ENST00000629555 2765 ntTSL 5 BASIC13.22□□□□□ -0.29
COL8A1P27658 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
COL8A1P27658 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC13.22□□□□□ -0.29
COL8A1P27658 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL8A1P27658 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC13.22□□□□□ -0.29
COL8A1P27658 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC13.22□□□□□ -0.29
COL8A1P27658 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.21□□□□□ -0.29
COL8A1P27658 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.21□□□□□ -0.29
COL8A1P27658 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.21□□□□□ -0.29
COL8A1P27658 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
COL8A1P27658 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC13.21□□□□□ -0.29
COL8A1P27658 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 AL512430.1-201ENST00000392575 860 ntBASIC13.21□□□□□ -0.29
COL8A1P27658 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC13.21□□□□□ -0.29
COL8A1P27658 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.21□□□□□ -0.29
COL8A1P27658 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms