Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.18□□□□□ -0.14
COL5A1P20908 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 AC092384.3-202ENST00000564646 2873 ntBASIC14.18□□□□□ -0.14
COL5A1P20908 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.18□□□□□ -0.14
COL5A1P20908 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.18□□□□□ -0.14
COL5A1P20908 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
COL5A1P20908 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.18□□□□□ -0.14
COL5A1P20908 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.18□□□□□ -0.14
COL5A1P20908 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
COL5A1P20908 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.18□□□□□ -0.14
COL5A1P20908 TMBIM7P-202ENST00000641474 1516 ntBASIC14.18□□□□□ -0.14
COL5A1P20908 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.18□□□□□ -0.14
COL5A1P20908 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 AC018463.1-201ENST00000456674 917 ntBASIC14.18□□□□□ -0.14
COL5A1P20908 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC14.18□□□□□ -0.14
COL5A1P20908 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC14.18□□□□□ -0.14
COL5A1P20908 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC14.18□□□□□ -0.14
COL5A1P20908 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC14.18□□□□□ -0.14
COL5A1P20908 NUDT4P2-201ENST00000578341 546 ntBASIC14.18□□□□□ -0.14
COL5A1P20908 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC14.18□□□□□ -0.14
COL5A1P20908 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC14.18□□□□□ -0.14
COL5A1P20908 AC084781.1-201ENST00000613737 656 ntBASIC14.18□□□□□ -0.14
COL5A1P20908 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
COL5A1P20908 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.18□□□□□ -0.14
COL5A1P20908 CASP16P-204ENST00000635032 809 ntBASIC14.18□□□□□ -0.14
COL5A1P20908 AL162727.3-201ENST00000635661 2787 ntBASIC14.18□□□□□ -0.14
COL5A1P20908 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.17□□□□□ -0.14
COL5A1P20908 WASH3P-207ENST00000560956 1394 ntBASIC14.17□□□□□ -0.14
COL5A1P20908 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.17□□□□□ -0.14
COL5A1P20908 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.17□□□□□ -0.14
COL5A1P20908 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.17□□□□□ -0.14
COL5A1P20908 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
COL5A1P20908 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.17□□□□□ -0.14
COL5A1P20908 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.17□□□□□ -0.14
COL5A1P20908 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC14.17□□□□□ -0.14
COL5A1P20908 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.17□□□□□ -0.14
COL5A1P20908 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.17□□□□□ -0.14
COL5A1P20908 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
COL5A1P20908 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.17□□□□□ -0.14
COL5A1P20908 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC14.17□□□□□ -0.14
COL5A1P20908 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
COL5A1P20908 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC14.17□□□□□ -0.14
COL5A1P20908 AL139008.1-201ENST00000437894 228 ntBASIC14.17□□□□□ -0.14
COL5A1P20908 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.17□□□□□ -0.14
COL5A1P20908 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC14.17□□□□□ -0.14
COL5A1P20908 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 AL132780.4-201ENST00000624870 1135 ntBASIC14.17□□□□□ -0.14
COL5A1P20908 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
COL5A1P20908 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.17□□□□□ -0.14
COL5A1P20908 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
COL5A1P20908 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
COL5A1P20908 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL5A1P20908 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.16□□□□□ -0.14
COL5A1P20908 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
COL5A1P20908 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC14.16□□□□□ -0.14
COL5A1P20908 POLD4-208ENST00000532830 904 ntTSL 3 BASIC14.16□□□□□ -0.14
COL5A1P20908 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.16□□□□□ -0.14
COL5A1P20908 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
COL5A1P20908 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC14.16□□□□□ -0.14
COL5A1P20908 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms