Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC15.22■□□□□ 0.03
COL6A3P12111 AC084364.1-201ENST00000551967 1556 ntBASIC15.22■□□□□ 0.03
COL6A3P12111 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC15.22■□□□□ 0.03
COL6A3P12111 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 AC011997.1-201ENST00000409845 1032 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 AC004910.1-201ENST00000433493 787 ntBASIC15.22■□□□□ 0.03
COL6A3P12111 AC004771.1-201ENST00000438266 583 ntTSL 2 BASIC15.22■□□□□ 0.03
COL6A3P12111 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
COL6A3P12111 MIR4459-201ENST00000581837 66 ntBASIC15.22■□□□□ 0.03
COL6A3P12111 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC15.22■□□□□ 0.03
COL6A3P12111 AC106782.5-201ENST00000616011 337 ntBASIC15.22■□□□□ 0.03
COL6A3P12111 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC15.22■□□□□ 0.03
COL6A3P12111 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC15.22■□□□□ 0.03
COL6A3P12111 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.22■□□□□ 0.03
COL6A3P12111 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC15.21■□□□□ 0.03
COL6A3P12111 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A3P12111 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A3P12111 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC15.21■□□□□ 0.03
COL6A3P12111 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A3P12111 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A3P12111 AP000533.1-201ENST00000456143 1177 ntBASIC15.21■□□□□ 0.03
COL6A3P12111 RNF7-205ENST00000480908 782 ntTSL 4 BASIC15.21■□□□□ 0.03
COL6A3P12111 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC15.21■□□□□ 0.03
COL6A3P12111 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC15.21■□□□□ 0.03
COL6A3P12111 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC15.21■□□□□ 0.03
COL6A3P12111 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.21■□□□□ 0.03
COL6A3P12111 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.21■□□□□ 0.03
COL6A3P12111 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC15.21■□□□□ 0.03
COL6A3P12111 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A3P12111 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A3P12111 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A3P12111 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A3P12111 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A3P12111 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A3P12111 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A3P12111 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
COL6A3P12111 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.21■□□□□ 0.03
COL6A3P12111 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
COL6A3P12111 SIRPB3P-201ENST00000340424 1216 ntBASIC15.21■□□□□ 0.03
COL6A3P12111 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A3P12111 AP000354.1-201ENST00000396982 456 ntBASIC15.21■□□□□ 0.03
COL6A3P12111 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC15.21■□□□□ 0.03
COL6A3P12111 WDR54-202ENST00000409791 854 ntTSL 3 BASIC15.21■□□□□ 0.03
COL6A3P12111 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC15.21■□□□□ 0.03
COL6A3P12111 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC15.21■□□□□ 0.03
COL6A3P12111 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC15.21■□□□□ 0.03
COL6A3P12111 AC087203.1-201ENST00000532111 1181 ntBASIC15.21■□□□□ 0.03
COL6A3P12111 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC15.21■□□□□ 0.03
COL6A3P12111 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC15.21■□□□□ 0.03
COL6A3P12111 AC114296.1-202ENST00000638019 771 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
COL6A3P12111 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.21■□□□□ 0.03
COL6A3P12111 AC019109.1-201ENST00000401725 1874 ntBASIC15.21■□□□□ 0.02
COL6A3P12111 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
COL6A3P12111 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.21■□□□□ 0.02
COL6A3P12111 AC006449.6-201ENST00000612330 2296 ntBASIC15.21■□□□□ 0.02
COL6A3P12111 REXO1L4P-201ENST00000605109 1937 ntBASIC15.21■□□□□ 0.02
COL6A3P12111 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL6A3P12111 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL6A3P12111 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL6A3P12111 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC15.2■□□□□ 0.02
COL6A3P12111 AL590440.2-201ENST00000641973 1595 ntBASIC15.2■□□□□ 0.02
COL6A3P12111 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 C6orf203-201ENST00000311381 900 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.2■□□□□ 0.02
COL6A3P12111 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.2■□□□□ 0.02
COL6A3P12111 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 GUCY2EP-203ENST00000531117 1918 ntBASIC15.2■□□□□ 0.02
COL6A3P12111 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
COL6A3P12111 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC15.2■□□□□ 0.02
COL6A3P12111 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.2■□□□□ 0.02
COL6A3P12111 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC15.2■□□□□ 0.02
COL6A3P12111 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.2■□□□□ 0.02
COL6A3P12111 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.2■□□□□ 0.02
COL6A3P12111 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
COL6A3P12111 APOO-201ENST00000379226 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC15.2■□□□□ 0.02
COL6A3P12111 RN7SL788P-201ENST00000460504 316 ntBASIC15.2■□□□□ 0.02
COL6A3P12111 DPY19L2P4-201ENST00000479881 442 ntBASIC15.2■□□□□ 0.02
COL6A3P12111 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC15.2■□□□□ 0.02
COL6A3P12111 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC15.2■□□□□ 0.02
COL6A3P12111 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC15.2■□□□□ 0.02
COL6A3P12111 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC15.2■□□□□ 0.02
COL6A3P12111 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC15.2■□□□□ 0.02
COL6A3P12111 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
COL6A3P12111 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A3P12111 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC15.2■□□□□ 0.02
COL6A3P12111 TNRC18P3-201ENST00000441896 2691 ntBASIC15.2■□□□□ 0.02
COL6A3P12111 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms