Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC114271.1-201ENST00000612689 2813 ntBASIC11.46□□□□□ -0.57
HLA-DQA1P01909 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 AC084364.1-201ENST00000551967 1556 ntBASIC11.46□□□□□ -0.57
HLA-DQA1P01909 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 AC020658.7-201ENST00000624274 2442 ntBASIC11.46□□□□□ -0.57
HLA-DQA1P01909 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 EMBP1-201ENST00000458200 901 ntBASIC11.46□□□□□ -0.57
HLA-DQA1P01909 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 AF238378.1-201ENST00000526806 358 ntBASIC11.46□□□□□ -0.57
HLA-DQA1P01909 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 SPTSSB-204ENST00000617024 1292 ntBASIC11.46□□□□□ -0.57
HLA-DQA1P01909 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 THSD7A-205ENST00000617773 10583 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
HLA-DQA1P01909 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 CYP51A1P2-201ENST00000419457 1499 ntBASIC11.45□□□□□ -0.58
HLA-DQA1P01909 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 AF186996.4-201ENST00000467186 377 ntBASIC11.45□□□□□ -0.58
HLA-DQA1P01909 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 UNC93B7-201ENST00000509439 705 ntBASIC11.45□□□□□ -0.58
HLA-DQA1P01909 AC022447.6-201ENST00000515522 438 ntBASIC11.45□□□□□ -0.58
HLA-DQA1P01909 CFL1-202ENST00000524553 860 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC11.45□□□□□ -0.58
HLA-DQA1P01909 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC11.45□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms