Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP4O75161 AC106827.1-201ENST00000366454 431 ntBASIC20.67■□□□□ 0.9
NPHP4O75161 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC20.67■□□□□ 0.9
NPHP4O75161 AC098934.1-203ENST00000442868 1262 ntBASIC20.67■□□□□ 0.9
NPHP4O75161 AL451000.1-201ENST00000451300 1186 ntBASIC20.67■□□□□ 0.9
NPHP4O75161 BPIFB5P-201ENST00000457066 1099 ntBASIC20.67■□□□□ 0.9
NPHP4O75161 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC20.67■□□□□ 0.9
NPHP4O75161 AC023906.1-201ENST00000486386 453 ntBASIC20.67■□□□□ 0.9
NPHP4O75161 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC20.67■□□□□ 0.9
NPHP4O75161 IGHV1-12-201ENST00000518307 205 ntBASIC20.67■□□□□ 0.9
NPHP4O75161 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC20.67■□□□□ 0.9
NPHP4O75161 AC013553.1-201ENST00000560906 267 ntBASIC20.67■□□□□ 0.9
NPHP4O75161 MT2A-202ENST00000561491 581 ntTSL 2 BASIC20.67■□□□□ 0.9
NPHP4O75161 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP4O75161 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP4O75161 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP4O75161 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP4O75161 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.66■□□□□ 0.9
NPHP4O75161 PCDHA12-202ENST00000613593 2588 ntBASIC20.66■□□□□ 0.9
NPHP4O75161 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.66■□□□□ 0.9
NPHP4O75161 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
NPHP4O75161 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC20.66■□□□□ 0.9
NPHP4O75161 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP4O75161 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
NPHP4O75161 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP4O75161 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.66■□□□□ 0.9
NPHP4O75161 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
NPHP4O75161 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC20.66■□□□□ 0.9
NPHP4O75161 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
NPHP4O75161 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
NPHP4O75161 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP4O75161 AC068831.5-201ENST00000557387 328 ntBASIC20.66■□□□□ 0.9
NPHP4O75161 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC20.66■□□□□ 0.9
NPHP4O75161 AC124068.2-201ENST00000569473 1109 ntBASIC20.66■□□□□ 0.9
NPHP4O75161 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC20.66■□□□□ 0.9
NPHP4O75161 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC20.66■□□□□ 0.9
NPHP4O75161 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP4O75161 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP4O75161 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP4O75161 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP4O75161 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
NPHP4O75161 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP4O75161 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
NPHP4O75161 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC20.65■□□□□ 0.9
NPHP4O75161 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.65■□□□□ 0.9
NPHP4O75161 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 NHP2P1-201ENST00000335274 462 ntBASIC20.65■□□□□ 0.9
NPHP4O75161 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC20.65■□□□□ 0.9
NPHP4O75161 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
NPHP4O75161 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 RN7SL564P-201ENST00000496309 250 ntBASIC20.65■□□□□ 0.9
NPHP4O75161 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC20.65■□□□□ 0.9
NPHP4O75161 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC20.65■□□□□ 0.9
NPHP4O75161 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC20.65■□□□□ 0.9
NPHP4O75161 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC20.65■□□□□ 0.9
NPHP4O75161 AC092862.1-201ENST00000541534 533 ntBASIC20.65■□□□□ 0.9
NPHP4O75161 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
NPHP4O75161 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC20.65■□□□□ 0.9
NPHP4O75161 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC20.65■□□□□ 0.9
NPHP4O75161 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC20.65■□□□□ 0.9
NPHP4O75161 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.65■□□□□ 0.9
NPHP4O75161 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
NPHP4O75161 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC20.65■□□□□ 0.9
NPHP4O75161 ACE-203ENST00000413513 2237 ntTSL 2 BASIC20.65■□□□□ 0.9
NPHP4O75161 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC20.65■□□□□ 0.9
NPHP4O75161 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP4O75161 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
NPHP4O75161 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
NPHP4O75161 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP4O75161 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP4O75161 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP4O75161 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP4O75161 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP4O75161 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP4O75161 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP4O75161 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC20.64■□□□□ 0.9
NPHP4O75161 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
NPHP4O75161 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP4O75161 ST13P19-201ENST00000442505 1124 ntBASIC20.64■□□□□ 0.89
NPHP4O75161 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC20.64■□□□□ 0.89
NPHP4O75161 HNRNPA1P42-201ENST00000458678 957 ntBASIC20.64■□□□□ 0.89
NPHP4O75161 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC20.64■□□□□ 0.89
NPHP4O75161 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC20.64■□□□□ 0.89
NPHP4O75161 IGHVIII-5-2-201ENST00000522505 261 ntBASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms