Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC19.08■□□□□ 0.64
NPHP1O15259 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC19.08■□□□□ 0.64
NPHP1O15259 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC19.08■□□□□ 0.64
NPHP1O15259 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC19.08■□□□□ 0.64
NPHP1O15259 MIR4706-201ENST00000582134 82 ntBASIC19.08■□□□□ 0.64
NPHP1O15259 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC19.08■□□□□ 0.64
NPHP1O15259 AL023803.2-201ENST00000620080 638 ntBASIC19.08■□□□□ 0.64
NPHP1O15259 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC19.08■□□□□ 0.64
NPHP1O15259 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC19.08■□□□□ 0.64
NPHP1O15259 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.64
NPHP1O15259 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.08■□□□□ 0.64
NPHP1O15259 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
NPHP1O15259 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
NPHP1O15259 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC19.07■□□□□ 0.64
NPHP1O15259 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
NPHP1O15259 NID2-208ENST00000617139 3827 ntTSL 5 BASIC19.07■□□□□ 0.64
NPHP1O15259 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
NPHP1O15259 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC19.07■□□□□ 0.64
NPHP1O15259 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC19.07■□□□□ 0.64
NPHP1O15259 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
NPHP1O15259 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC19.07■□□□□ 0.64
NPHP1O15259 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
NPHP1O15259 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
NPHP1O15259 AL354877.1-201ENST00000424412 413 ntBASIC19.07■□□□□ 0.64
NPHP1O15259 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC19.07■□□□□ 0.64
NPHP1O15259 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 MAGEA5-201ENST00000446757 942 ntBASIC19.07■□□□□ 0.64
NPHP1O15259 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC19.07■□□□□ 0.64
NPHP1O15259 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC19.07■□□□□ 0.64
NPHP1O15259 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 EID1-202ENST00000560490 584 ntTSL 3 BASIC19.07■□□□□ 0.64
NPHP1O15259 AC106820.3-201ENST00000561653 397 ntBASIC19.07■□□□□ 0.64
NPHP1O15259 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC19.07■□□□□ 0.64
NPHP1O15259 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 ABR-205ENST00000544583 5595 ntTSL 2 BASIC19.07■□□□□ 0.64
NPHP1O15259 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
NPHP1O15259 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
NPHP1O15259 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
NPHP1O15259 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC19.06■□□□□ 0.64
NPHP1O15259 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC19.06■□□□□ 0.64
NPHP1O15259 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC19.06■□□□□ 0.64
NPHP1O15259 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC19.06■□□□□ 0.64
NPHP1O15259 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC19.06■□□□□ 0.64
NPHP1O15259 CASK-202ENST00000378158 3848 ntTSL 5 BASIC19.06■□□□□ 0.64
NPHP1O15259 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC19.06■□□□□ 0.64
NPHP1O15259 RNMTL1P1-201ENST00000454103 560 ntBASIC19.06■□□□□ 0.64
NPHP1O15259 SUPT4H1P2-201ENST00000501248 353 ntBASIC19.06■□□□□ 0.64
NPHP1O15259 FTLP10-202ENST00000505798 471 ntBASIC19.06■□□□□ 0.64
NPHP1O15259 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 AC134698.3-201ENST00000523880 214 ntBASIC19.06■□□□□ 0.64
NPHP1O15259 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC19.06■□□□□ 0.64
NPHP1O15259 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC19.06■□□□□ 0.64
NPHP1O15259 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC19.06■□□□□ 0.64
NPHP1O15259 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC19.06■□□□□ 0.64
NPHP1O15259 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC19.06■□□□□ 0.64
NPHP1O15259 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC19.06■□□□□ 0.64
NPHP1O15259 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC19.06■□□□□ 0.64
NPHP1O15259 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 AC128714.1-201ENST00000637035 887 ntBASIC19.06■□□□□ 0.64
NPHP1O15259 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.06■□□□□ 0.64
NPHP1O15259 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
NPHP1O15259 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NPHP1O15259 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms