Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 FAM197Y8-203ENST00000450145 560 ntBASIC11.14□□□□□ -0.63
SMKR1H3BMG3 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 PRR29-207ENST00000580752 458 ntTSL 3 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 AC025580.3-201ENST00000617932 1424 ntBASIC11.14□□□□□ -0.63
SMKR1H3BMG3 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
SMKR1H3BMG3 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 AC055811.4-201ENST00000624039 1754 ntBASIC11.13□□□□□ -0.63
SMKR1H3BMG3 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 BCAR1-209ENST00000546196 1340 ntBASIC11.13□□□□□ -0.63
SMKR1H3BMG3 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 HCG4P8-203ENST00000443049 980 ntBASIC11.13□□□□□ -0.63
SMKR1H3BMG3 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 AC018712.1-201ENST00000455767 687 ntBASIC11.13□□□□□ -0.63
SMKR1H3BMG3 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 SKP2-204ENST00000508514 821 ntTSL 3 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 SPIB-207ENST00000597855 564 ntTSL 4 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms