Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 PRKN-211ENST00000615065 261 ntTSL 5 BASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 DBET-201ENST00000630918 3363 ntBASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SSX2IPQ9Y2D8 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 AC006058.4-201ENST00000624016 1670 ntBASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 AL591846.1-201ENST00000451736 433 ntBASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 C2orf69P2-201ENST00000562032 1123 ntBASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 IGHV3OR16-16-201ENST00000563644 343 ntBASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 AL603764.1-201ENST00000636452 321 ntBASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 AC068587.10-201ENST00000641210 219 ntBASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SSX2IPQ9Y2D8 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 AL139094.1-201ENST00000405549 1188 ntBASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 AC004898.1-201ENST00000451057 766 ntBASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 MIR4741-201ENST00000579822 90 ntBASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX2IPQ9Y2D8 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SSX2IPQ9Y2D8 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SSX2IPQ9Y2D8 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SSX2IPQ9Y2D8 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SSX2IPQ9Y2D8 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.33■□□□□ 0.21
SSX2IPQ9Y2D8 AL603832.2-201ENST00000566195 2125 ntBASIC16.33■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms