Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 AC079140.1-201ENST00000508039 487 ntBASIC13.91□□□□□ -0.18
CLN6Q9NWW5 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 AC140113.2-201ENST00000604370 208 ntBASIC13.91□□□□□ -0.18
CLN6Q9NWW5 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 FAM197Y3-203ENST00000618346 717 ntBASIC13.91□□□□□ -0.18
CLN6Q9NWW5 CAND2-206ENST00000626378 333 ntTSL 5 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 AL645728.2-202ENST00000641679 227 ntBASIC13.91□□□□□ -0.18
CLN6Q9NWW5 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 AP3S2-216ENST00000617003 1561 ntBASIC13.91□□□□□ -0.18
CLN6Q9NWW5 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CLN6Q9NWW5 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 KRT8P48-201ENST00000515599 1220 ntBASIC13.9□□□□□ -0.18
CLN6Q9NWW5 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 AC015910.1-201ENST00000579400 975 ntBASIC13.9□□□□□ -0.18
CLN6Q9NWW5 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 AC084121.4-201ENST00000641598 221 ntBASIC13.9□□□□□ -0.18
CLN6Q9NWW5 AF228730.8-201ENST00000642140 221 ntBASIC13.9□□□□□ -0.18
CLN6Q9NWW5 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLN6Q9NWW5 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
CLN6Q9NWW5 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.89□□□□□ -0.19
CLN6Q9NWW5 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms